1 5' 3' | 2 5' 3' | 3 5' 3' |
...tccatgaatttgcaaacatgaacatgttcatgggccctcaaatttcagtcgctctttgatgtacatgctaactaatcccactgctgaatgatccatgcagGGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAACCTCTCGATGCTGACTTCCATGAACACAGGAAACACAGGCAGCGTGTTC
species | Zea mays |
transcript | GRMZM2G178261_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGAGCTACGCCACGGGTGCGACTGACCCTTGCTCTCTGCAATATAACAG GGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAAEST: gi|21809729|gb|BQ668047.1|BQ668047
genomic: AAGAGCTACGCCACGGGTGCGACTGACCCTTGCTCTCTGCAATATAACAGgtattttctt ... atccatgcagGGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAA
EST: AAGAGCTACGCCACGGGTGCGACTGACCCTTGCTCTCTGCAATATAACAG GGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAAEST: gi|21843455|gb|BQ704036.1|BQ704036
genomic: AAGAGCTACGCCACGGGTGCGACTGACCCTTGCTCTCTGCAATATAACAGgtattttctt ... atccatgcagGGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAA
EST: AAGAGCTACGCCACGGGTGCGACTGACCCTTGCTCTCTGCAATATAACAG GGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAAEST: gi|22819474|gb|BU499564.1|BU499564
genomic: AAGAGCTACGCCACGGGTGCGACTGACCCTTGCTCTCTGCAATATAACAGgtattttctt ... atccatgcagGGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAA
EST: AAGAGCTACGCCACGGGTGCGACTGACCCTTGCTCTCTGCAATATAACAG GGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAA
genomic: AAGAGCTACGCCACGGGTGCGACTGACCCTTGCTCTCTGCAATATAACAGgtattttctt ... atccatgcagGGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAA
cagtcgctctttgatgtacatgctaactaatcccactgctgaatgatccatgcagGGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAACCTCTCGATGCTGACTTCCATGAACACAGGAAACACAGGCAGCGTGTTC
taactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccatgaatttgcaaacatgaacatgttcatgggccctcaaatttcagtcgctctttgatgtacatgctaactaatcccactgctgaatgatccatgcagGGAACTGGTGAACAAACAGAATGAGAGCGAAAACATGCAGGACTCCGACAACCTCTCGATGCTGACTTCCATGAACACAGGAAACACAGGCAGCGTGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG