1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatgtgttcttctgccaatttgcttacacactattctattctacattgagcttaacggtcagacttttgacaggcacttatccagTATACTGATGCCCCAACTGCTCTTGAAGCTAAAAACTCATTGGATGGAAGAAGCATCCCCAA
species | Zea mays |
transcript | GRMZM2G178169_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG GEST: gi|101382157|gb|EB813134.1|EB813134
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG GEST: gi|101382157|gb|EB813134.1|EB813134
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG GEST: gi|101382157|gb|EB813134.1|EB813134
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG GEST: gi|101382157|gb|EB813134.1|EB813134
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG GEST: gi|101399658|gb|EB821675.1|EB821675
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG GEST: gi|101399658|gb|EB821675.1|EB821675
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG GEST: gi|101399658|gb|EB821675.1|EB821675
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG GEST: gi|101399658|gb|EB821675.1|EB821675
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG GEST: gi|101399658|gb|EB821675.1|EB821675
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
EST: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAG G
genomic: TTGGATTTGTTCACAAGATAGCTACTTTTGAGAAAGCAGCTGGTTTCCAGgtaatgtgtt ... acttatccag-
ctattctattctacattgagcttaacggtcagacttttgacaggcacttatccagTATACTGATGCCCCAACTGCTCTTGAAGCTAAAAACTCATTGGATGGAAGAAGCATCCCCAA
ttttgac putative branch site (score: 3)
cttatcc putative PPT
tattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtgttcttctgccaatttgcttacacactattctattctacattgagcttaacggtcagacttttgacaggcacttatccagTATACTGATGCCCCAACTGCTCTTGAAGCTAAAAACTCATTGGATGGAAGAAGCATCCCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC