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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgaactatattcaagaggtaactacaaagtagggaacttatccagtgttgatccatcccttgctcgttatatcttcatttatgtcacttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA

Basic information

species Zea mays
transcript GRMZM2G177970_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60398533|gb|DN231349.1|DN231349
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|211458161|gb|FL127573.1|FL127573
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|211458164|gb|FL127576.1|FL127576
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAAT
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCAAT
EST: gi|71449704|gb|DR830754.1|DR830754
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|50331394|gb|CO526520.1|CO526520
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|211458162|gb|FL127574.1|FL127574
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|76294199|gb|DV033767.1|DV033767
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|211458163|gb|FL127575.1|FL127575
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
EST: gi|78120428|gb|DV538812.1|DV538812
EST:     TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAG                         GATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
genomic: TTCACCTTGGAAATTATCTAGGGGCAATTAAGAATTGGGTTGCACTTCAGgtattacatg ... ttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtgttgatccatcccttgctcgttatatcttcatttatgtcacttctgtgcagGATTCATATGAGACATTCTTTTTCATCGTGGATCTTCATGCA
   tgttgat  putative branch site (score: 4)
                                         tcacttct  putative PPT
                        ttatatcttcatttat  TA-rich tract