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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcatatttctggaatctggatctacttgtaaaatacattacatgcagtatctgaaaaaaaatttacttctttttcattagTTGTGGACAGACTCAAACAGGGTCATTTCTGGATGCTGCTGCTCCTAATGGTCTTTTTGGACTTGGAATAGATGAGGTTTCAGTTCCAAGTATTTTAGCT

Basic information

species Zea mays
transcript GRMZM2G177575_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91875997|gb|EB405954.1|EB405954
EST:     TCAACGGAGAATGCCCATCCTCAAATTCTCAAGGCACAAATAATGCTTGG                         TTGTGGACAGACTCAAACAGGGTCATTTCTGGATGCTGCTGCTCCTAATGG
genomic: TCAACGGAGAATGCCCATCCTCAAATTCTCAAGGCACAAATAATGCTTGGgtaatcatat ... ttttcattagTTGTGGACAGACTCAAACAGGGTCATTTCTGGATGCTGCTGCTCCTAATGG
EST: gi|78110126|gb|DV528541.1|DV528541
EST:     TCAACGGAGAATGCCCATCCTCAAATTCTCAAGGCACAAATAATGCTTGG                         TTGTGGACAGACTCAAACAGGGTCATTTCTGGATGCTGCTGCTCCTAATGG
genomic: TCAACGGAGAATGCCCATCCTCAAATTCTCAAGGCACAAATAATGCTTGGgtaatcatat ... ttttcattagTTGTGGACAGACTCAAACAGGGTCATTTCTGGATGCTGCTGCTCCTAATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaaaatacattacatgcagtatctgaaaaaaaatttacttctttttcattagTTGTGGACAGACTCAAACAGGGTCATTTCTGGATGCTGCTGCTCCTAATGGTCTTTTTGGACTTGGAATAGATGAGGTTTCAGTTCCAAGTATTTTAGCT
                                    tttacttctttttcat  CT-rich tract
 tgaaaaaaaatttact  TA-rich tract