1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttatgagggaataaactaaaagctgaaaaccatgtttcgagcagcttttctagcttttgtcaaatgcttcacagttactcattgagtactttcttgccagGCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAATCTTCTTGCAAGGCTGCCACCTCGGGTTCATTCAGTTTACTATCGTGAT
species | Zea mays |
transcript | GRMZM2G177273_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAG GCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAAEST: gi|32932468|gb|CF037280.1|CF037280
genomic: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAGgttatagtct ... ttcttgccagGCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAA
EST: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAG GCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAAEST: gi|33093879|gb|CF053873.1|CF053873
genomic: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAGgttatagtct ... ttcttgccagGCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAA
EST: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAG GCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAAEST: gi|32932488|gb|CF037300.1|CF037300
genomic: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAGgttatagtct ... ttcttgccagGCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAA
EST: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAG GCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAAEST: gi|21389947|gb|BQ527996.1|BQ527996
genomic: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAGgttatagtct ... ttcttgccagGCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAA
EST: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAG GCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAA
genomic: CAGTATAAACTGAAACACGGTGGTGCTCGTCACAAAGGAGTCTTTTCCAGgttatagtct ... ttcttgccagGCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAA
ttttctagcttttgtcaaatgcttcacagttactcattgagtactttcttgccagGCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAATCTTCTTGCAAGGCTGCCACCTCGGGTTCATTCAGTTTACTATCGTGAT
ctttcttgcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgagggaataaactaaaagctgaaaaccatgtttcgagcagcttttctagcttttgtcaaatgcttcacagttactcattgagtactttcttgccagGCTTGAGTATCAATCTAGGCCATCTATCAGTGGAGCTTCGTCCTTTAAGAATCTTCTTGCAAGGCTGCCACCTCGGGTTCATTCAGTTTACTATCGTGAT
- - - - - - aaactaa
- - - - - - - - - - agctgaa
- - - - - - - - - - - - - - - -atgtttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttcac