1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagctctgctctccatcaccaattaggcttattccaccaagttcattagagttcaattgtggttctgatcgattaacacgaattcctttgtactctatggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG
species | Zea mays |
transcript | GRMZM2G176903_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|71305516|gb|DR788901.1|DR788901
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTTGGCCGTGGAATTTEST: gi|71769569|gb|DR967506.1|DR967506
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATT-GGCCGTGGATTTT
EST: CCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|60394069|gb|DN226939.1|DN226939
genomic: CCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCACGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|91052484|gb|EB162902.1|EB162902
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|67012842|gb|CO441591.1|CO441591
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|93011745|gb|EB637265.1|EB637265
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|149075226|gb|EE163727.2|EE163727
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|91873626|gb|EB403583.1|EB403583
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTEST: gi|76291653|gb|DV031221.1|DV031221
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|71441912|gb|DR822962.1|DR822962
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAA AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGEST: gi|148968047|gb|EE019380.2|EE019380
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGG
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|71449217|gb|DR830267.1|DR830267
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|149084348|gb|EE173792.2|EE173792
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGAATGGGAATTGTGGCTTACAGTC-AATTGGCCGTGGATTTEST: gi|44901166|gb|CK827711.1|CK827711
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGG-AATTGTGGCTTACAGTCCAATTGGCCGTGGATTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCACGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|71763494|gb|DR961431.1|DR961431
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|71313076|gb|DR793065.1|DR793065
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|71769570|gb|DR967507.1|DR967507
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|71313078|gb|DR793066.1|DR793066
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|76932705|gb|DV173124.1|DV173124
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTEST: gi|91877438|gb|EB407395.1|EB407395
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|32834502|gb|CD974180.1|CD974180
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCACGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|93016813|gb|EB642333.1|EB642333
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTEST: gi|50324103|gb|CO519229.1|CO519229
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
EST: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAG AGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
genomic: TGGTCGCTCTGGTCCCGAGACATCGAGCCCGAGATCGTGCCACTCTGCAGgtgagctctg ... tggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTT
tcaattgtggttctgatcgattaacacgaattcctttgtactctatggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG
gattaac putative branch site (score: 78)
attaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctctgctctccatcaccaattaggcttattccaccaagttcattagagttcaattgtggttctgatcgattaacacgaattcctttgtactctatggtctacagAGAATTGGGGATTGGAATTGTGGCTTACAGTCCAATTGGCCGTGGATTTTTTGGTGGAAGAGGAGTGATACAGCAAGTTTCTTCTGAATCTAGTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG