Sequence
atgc intronic sequence ATGC exonic sequencegtatgccaaaggcttgctcgtagtctatgcgttgtgttgttggacaaaagttaatataaaccattttttgtgttgaataactctaatggctaataacaaacgatgaattttgcataatttattatgttttgactacttttgttcagGTATTGTGGTTACTAATGATGGTAATTCTATTTTGAGGGAAATAGACATCGCACACCCTGCTGCCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G175510_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g34690.1 (Oryza sativa), 3'ss of exon 3
gtatgccaaaggcttgctcgtagtctatgcgttgtgttgttggacaaaagttaatataaaccattttttgtgttgaataactctaatggctaataacaaacgatgaattttgcataatttattatgttttgactacttttgtt----cagGTATTGTGGTTACTAATGATGGTAATTCTATTTTGAGGGAAATAGACATCGCACACCCTGCTGCCAAG
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--------------------------------------------------attttctatctcatcaccttggaggcatttctgttttcacatttgcaattttcctggttttacaaggttcattgtatttgggttctttctgtttttgcagGTATTGTGGTTACTAATGATGGCAATGCTATATTGCGAGAAATAGATATTGCACATCCTGCTGCCAAG
upper sequence: GRMZM2G175510_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv17s0000g08170.t01 (Vitis vinifera), 3'ss of exon 3
gtatgccaaaggcttgctcgtagtctatgcgttgtgttgttggacaaa-agttaatataaaccattttttgtgttgaataactctaatggctaataacaaacgatgaattttgcataatttattatgttttgactacttttgttcagGTATTGTGGTTACTAATGATGGTAATTCTATTTTGAGGGAAATAGACATCGCACACCCTGCTGCCAAG
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-----------------------------tattttcttgactgccaaacattttataataataaatcttaccttttgtcaagcccagttactta---------gtcaatttc---tgatctattt--ttctggatgctgt----cagGTATTGTGGTCACTAATGATGGAAATTCTATTCTTCGGGAGTTAGATCTTGCTCATCCAGCTGCTAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataacaaacgatgaattttgcataatttattatgttttgactacttttgttcagGTATTGTGGTTACTAATGATGGTAATTCTATTTTGAGGGAAATAGACATCGCACACCCTGCTGCCAAG
cttttgttc CT-rich tract
atgaattttgcataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgccaaaggcttgctcgtagtctatgcgttgtgttgttggacaaaagttaatataaaccattttttgtgttgaataactctaatggctaataacaaacgatgaattttgcataatttattatgttttgactacttttgttcagGTATTGTGGTTACTAATGATGGTAATTCTATTTTGAGGGAAATAGACATCGCACACCCTGCTGCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC