Sequence
atgc intronic sequence ATGC exonic sequencegtgaagggcgcccttggtgtaatcttattgactgttgtagatgatgaagttgcaagttaatgtatttgagtacttcgactcacgtcagcttattgtttgtggcaaccatttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G175419_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA03G33270.3 (Glycine max), 3'ss of exon 2
gtgaagggcgcccttggtgtaatcttattgactgttgtaga-tgatgaagttgcaagttaatgtatttgagtacttcgactcacgtcagcttattgtttgtggcaaccatttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT------------------------------------------------------------
||| || | | || ||| | ||||| | |||| ||| || |||| | | |||||||||| ||| ||||||||||||||| |||||| || || ||||| ||| | || || ||
----------cccaaactggtgtttagttcgtctttgaggggtgatgtatcatacagttccagtagttaagtaatg--------atggccttattgtttctggaaaccatttccgcagAGTTCGAGGCGTAGATATGAAGAATGATTTCGCCTTTGTTGTAAGTTGTCACCCTTTCTGTCTTTATGTATTTCTTTTTTACTTCAATTTCTCCTCATGC
upper sequence: GRMZM2G175419_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G35990.1 (Glycine max), 3'ss of exon 2
gtgaagggcgcccttggtgtaatcttattgactgttgtaga-tgatgaagttgcaagttaatgtatttgagtacttcgactcacgtcagcttattgtttgtggcaaccatttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
| | || | | || ||| | ||||| | |||| ||| || |||| | | |||||||||| |||||||||||||||||||||||||| || || ||||| ||| | ||| || ||
----------cacaaactggtgtttagttcgtctttgaggggtgatgtatcatacagttccagtagttaagtaatg--------atggccttattgtttctggcaaccatttccgcagAATTCGAGGTGTAGATATGAAGAATGATTTTGCCTTTGTT
upper sequence: GRMZM2G175419_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA03G33270.1 (Glycine max), 3'ss of exon 2
gtgaagggcgcccttggtgtaatcttattgactgttgtaga-tgatgaagttgcaagttaatgtatttgagtacttcgactcacgtcagcttattgtttgtggcaaccatttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
||| || | | || ||| | ||||| | |||| ||| || |||| | | |||||||||| ||| ||||||||||||||| |||||| || || ||||| ||| | || || ||
----------cccaaactggtgtttagttcgtctttgaggggtgatgtatcatacagttccagtagttaagtaatg--------atggccttattgtttctggaaaccatttccgcagAGTTCGAGGCGTAGATATGAAGAATGATTTCGCCTTTGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18660552|gb|BM500923.1|BM500923EST: GCCCTTGATGGAATTGGTGGCCATAGTTCCAATGTTTGTGGAGGACTTTG AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: GCCCTTGATGGAATTGGTGGCCATAGTTCCAATGTTTGTGGAGGACTTTGgtgaagggcg ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttgagtacttcgactcacgtcagcttattgtttgtggcaaccatttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
gactcac putative branch site (score: 2)
ccatttcc putative PPT
ttattgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgaagggcgcccttggtgtaatcttattgactgttgtagatgatgaagttgcaagttaatgtatttgagtacttcgactcacgtcagcttattgtttgtggcaaccatttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC