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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcctgcctgtgactgaagaaattgcatctatattgaccttgttgtattttggccacaactggatgctttagctcctgactttttttgttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCCTACCGTTGCTCGTCCGATACGTTTGATCCCCAAGGACGCACTTTCGATA

Basic information

species Zea mays
transcript GRMZM2G174830_T03
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74242321|gb|DT650235.1|DT650235
EST:     ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT                         GGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
genomic: ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAATgtgagcctgc ... ttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
EST: gi|78114801|gb|DV533189.1|DV533189
EST:     ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT                         GGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
genomic: ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAATgtgagcctgc ... ttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
EST: gi|71433192|gb|DR814242.1|DR814242
EST:     ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT                         GGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
genomic: ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAATgtgagcctgc ... ttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
EST: gi|211353516|gb|FL063245.1|FL063245
EST:     ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT                         GGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
genomic: ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAATgtgagcctgc ... ttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
EST: gi|211351121|gb|FL063242.1|FL063242
EST:     ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT                         GGGAATTGACGCGACTATGACGTCAG
genomic: ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAATgtgagcctgc ... ttcttttcagGGGAAT-GACGCGACTATGACGTCAG
EST: gi|211351119|gb|FL063240.1|FL063240
EST:     ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT                         GGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTTC
genomic: ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAATgtgagcctgc ... ttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
EST: gi|78081398|gb|DV509810.1|DV509810
EST:     ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT                         GGGAATGACGCGACTATGACGTCAGTAAGTG
genomic: ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAATgtgagcctgc ... ttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTG
EST: gi|211351120|gb|FL063241.1|FL063241
EST:     ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT                         GGGAATGACGTGACTATGACTTCAGTAAGTGGCCACGCAGATGATCTTTCC
genomic: ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAATgtgagcctgc ... ttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
EST: gi|211351122|gb|FL063243.1|FL063243
EST:     ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT                         GGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC
genomic: ACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAATgtgagcctgc ... ttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtattttggccacaactggatgctttagctcctgactttttttgttcttttcagGGGAATGACGCGACTATGACGTCAGTAAGTGGCCACGCAGATGATCTTTCCTACCGTTGCTCGTCCGATACGTTTGATCCCCAAGGACGCACTTTCGATA
                              tcctgac  putative branch site (score: 2)
                             ctcctgactttttttg  CT-rich tract
                                     tttttttgttctttt  TA-rich tract