1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgatttatactcctatacggagcatgtagcgagaaagatacatgtaattttttctttccttcgtctaccagCAGATGGGCCACCTGAGCAAGGAGGAGTTCGTTCACGTGCTCCGGCGGCAGAGCACGGGGTTCCCCCGGGGCAGCTCCAAGTACAGAGGCGTGACGCTCC
species | Zea mays |
transcript | GRMZM2G174784_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCCGACATCAATTTCAGTCTGGAGGATTACCAGGACGACATGAAGCAG CAGATGGGCCACCTGAGCAAGGAGGAGTTCGTTCACGTGCTCCGGCGGCAGEST: gi|110933863|gb|EE154089.1|EE154089
genomic: AGGCCGACATCAATTTCAGTCTGGAGGATTACCAGGACGACATGAAGCAGgtgatttata ... cgtctaccagCAGATGGGCCACCTGAGCAAGGAGGAGTTCGTTCACGTGCTCCGGCGGCAG
EST: AGGCCGACATCAATTTCAGTCTGGAGGATTACCAGGACGACATGAAGCAG -A--TGGGCCACCTGAGCAAGGAGGAGTTCGTTCACGTGCTCCGGCGGCAG
genomic: AGGCCGACATCAATTTCAGTCTGGAGGATTACCAGGACGACATGAAGCAGgtgatttata ... cgtctaccagCAGATGGGCCACCTGAGCAAGGAGGAGTTCGTTCACGTGCTCCGGCGGCAG
acggagcatgtagcgagaaagatacatgtaattttttctttccttcgtctaccagCAGATGGGCCACCTGAGCAAGGAGGAGTTCGTTCACGTGCTCCGGCGGCAGAGCACGGGGTTCCCCCGGGGCAGCTCCAAGTACAGAGGCGTGACGCTCC
ttttttctttccttcg CT-rich tract
atacatgtaatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatttatactcctatacggagcatgtagcgagaaagatacatgtaattttttctttccttcgtctaccagCAGATGGGCCACCTGAGCAAGGAGGAGTTCGTTCACGTGCTCCGGCGGCAGAGCACGGGGTTCCCCCGGGGCAGCTCCAAGTACAGAGGCGTGACGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC