1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tattcttattctgtactgagtcccatacataaaataacttctctctatatttaatgtgatgattcatgctaatgtttttacctgttcctgctgagtgcagTTGATGGAATACTGTGAATTGTTAGACAAAGCAGATGAATGTGAGGATCCATACATGTGTATGGTTTATGCTTGTAAGTTTTCTGCTTCCCTTCCCTTGC
species | Zea mays |
transcript | GRMZM2G174644_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAG TTGATGGAATACTGTGAATTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|211271998|gb|FK970181.1|FK970181
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAGgtttgtactt ... ctgagtgcagTTGATGGAATACTGTGAATTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAG TTGATGGAATACTGTGAATTGTTAGACAAAGCAGATGAATGTGAGGATCCAEST: gi|149009147|gb|EE041283.2|EE041283
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAGgtttgtactt ... ctgagtgcagTTGATGGAATACTGTGAATTGTTAGACAAAGCAGATGAATGTGAGGATCCA
EST: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAG TTGATGGAATACTGTGAATTGTTACACAAAGCAGATGAATGTGAGGATCCA
genomic: TTCCAGTCATAATTTTTGAGCCAATGACAATGCTTCAGAAAATGGCCGAGgtttgtactt ... ctgagtgcagTTGATGGAATACTGTGAATTGTTAGACAAAGCAGATGAATGTGAGGATCCA
tatatttaatgtgatgattcatgctaatgtttttacctgttcctgctgagtgcagTTGATGGAATACTGTGAATTGTTAGACAAAGCAGATGAATGTGAGGATCCATACATGTGTATGGTTTATGCTTGTAAGTTTTCTGCTTCCCTTCCCTTGC
tgctaat putative branch site (score: 744)
ttcctgct putative PPT
taatgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcttattctgtactgagtcccatacataaaataacttctctctatatttaatgtgatgattcatgctaatgtttttacctgttcctgctgagtgcagTTGATGGAATACTGTGAATTGTTAGACAAAGCAGATGAATGTGAGGATCCATACATGTGTATGGTTTATGCTTGTAAGTTTTCTGCTTCCCTTCCCTTGC
- - - - - -tgtactg
- - - - - - - - - - - ccataca
- - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgc