1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcagcctctcctcctccacggactgtgaatcgtagtagttgtgagatatgaactgcaaattgtaatgccacgctatgctcccctgtgccgtgcagTCCTTCCTCTACCAGATTCTGCGGGGCATCGCCTACTGCCACTCGCACCGCGTGCTCCACCGCGACCTGAAGCCGCAGAACCTGCTGATTGACCGCCGCA
species | Zea mays |
transcript | GRMZM2G174596_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGCACATGGACTCCTCCACGGACTTCAAGAACCACCGCATAGTCAAA TCCTTCCTCTACCAGATTCTGCGGGGCATCGCCTACTGCCACTCGCACCGCEST: gi|6166634|gb|AW144898.1|AW144898
genomic: AGAAGCACATGGACTCCTCCACGGACTTCAAGAACCACCGCATAGTCAAAgtcagcctct ... tgccgtgcagTCCTTCCTCTACCAGATTCTGCGGGGCATCGCCTACTGCCACTCGCACCGC
EST: AGAAGCACATGGACTCCTCCACGGACTTCAAGAACCACCGCATAGTCAAA TCCTTCCTCTACCAGATTCTGCGGGGCATCGCCTACTGCCACTCGCACCGCEST: gi|88752963|gb|DY537104.1|DY537104
genomic: AGAAGCACATGGACTCCTCCACGGACTTCAAGAACCACCGCATAGTCAAAgtcagcctct ... tgccgtgcagTCCTTCCTCTACCAGATTCTGCGGGGCATCGCCTACTGCCACTCGCACCGC
EST: AGAAGCACATGGACTCCTCCACGGACTTCAAGAACCACCGCATAGTCAAA TCCCTTCCTCTACCAAATTCTGCGGGGCATCGCCTACTGCCACTCGCACCGEST: gi|78103919|gb|DV522337.1|DV522337
genomic: AGAAGCACATGGACTCCTCCACGGACTTCAAGAACCACCGCATAGTCAAAgtcagcctct ... tgccgtgcagTCC-TTCCTCTACCAGATTCTGCGGGGCATCGCCTACTGCCACTCGCACCG
EST: AGAAGCACATGGACTCCTCCACGGACTTCAAGAACCACCGCATAGTCAAA TCCTTCCTCTACCAGATTCTGGGGGGCATCGCCTACTGCCACTCGCACCGC
genomic: AGAAGCACATGGACTCCTCCACGGACTTCAAGAACCACCGCATAGTCAAAgtcagcctct ... tgccgtgcagTCCTTCCTCTACCAGATTCTGCGGGGCATCGCCTACTGCCACTCGCACCGC
gtgagatatgaactgcaaattgtaatgccacgctatgctcccctgtgccgtgcagTCCTTCCTCTACCAGATTCTGCGGGGCATCGCCTACTGCCACTCGCACCGCGTGCTCCACCGCGACCTGAAGCCGCAGAACCTGCTGATTGACCGCCGCA
ctcccctgt CT-rich tract
aaattgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagcctctcctcctccacggactgtgaatcgtagtagttgtgagatatgaactgcaaattgtaatgccacgctatgctcccctgtgccgtgcagTCCTTCCTCTACCAGATTCTGCGGGGCATCGCCTACTGCCACTCGCACCGCGTGCTCCACCGCGACCTGAAGCCGCAGAACCTGCTGATTGACCGCCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT