1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactccaagcatttttaccagttattgtagtcaatacttttgtgtagtgactgtattaggtgctagccatggttcactgagattacctctttatatcaccccctcccctcccctctatcgaaattgctgctcacaatagtattctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGG
species | Zea mays |
transcript | GRMZM2G174204_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|60340980|gb|DN207953.1|DN207953
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|45847995|gb|CN071938.1|CN071938
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTTTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|60354693|gb|DN221666.1|DN221666
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|60347312|gb|DN214285.1|DN214285
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|76917032|gb|DV166647.1|DV166647
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: TCCGAGGTACACTTCTCTGGGTGTTATGACAAGGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|50332540|gb|CO527666.1|CO527666
genomic: TCCGATGTACACTTCTCTTGGTGTTATGACAA-GGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTTTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTTTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|45847152|gb|CN071095.1|CN071095
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|211523708|gb|FL481391.1|FL481391
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|60350420|gb|DN217393.1|DN217393
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|211296298|gb|FL480002.1|FL480002
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|78109119|gb|DV527536.1|DV527536
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|5739867|gb|AI947557.1|AI947557
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|60353886|gb|DN220859.1|DN220859
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|17930472|gb|BM267432.1|BM267432
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|45847376|gb|CN071319.1|CN071319
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|37386665|gb|CF630520.1|CF630520
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGEST: gi|24766881|gb|CA402026.1|CA402026
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
EST: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGACCAATCATTGAG GTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
genomic: GTCCGATGTACACTTCTCTTGGTGTTATGACAAGGGGAACAATCATTGAGgtactccaag ... attctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGG
tcaccccctcccctcccctctatcgaaattgctgctcacaatagtattctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGG
tgctcac putative branch site (score: 63)
tattctttc putative PPT
aatagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactccaagcatttttaccagttattgtagtcaatacttttgtgtagtgactgtattaggtgctagccatggttcactgagattacctctttatatcaccccctcccctcccctctatcgaaattgctgctcacaatagtattctttcagGTAAATGTCAGTGAGCTTGGTCTGGTAACTCCCGCTGGAAAAGTTGTTTGGG
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