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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attattaactcatacatatttctcatacatatatttatcataccatacttctaaacaaaaatgctaactgtattttttcatctatccccatgttacacagGATGCCTAATAAACCACTTTCAGCATTGACTCTACAAGATCGAAATGCAGAGGTTCAAATACAGGTCCACAGGAAATGGGAGTTTCGAGGTGCCGTTGAC

Basic information

species Zea mays
transcript GRMZM2G174114_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60341388|gb|DN208361.1|DN208361
EST:     GACAGCTC-ATATCGACCATCAACAAAGATAAG                         GATGCCTAATAAACCACTTTCAGCATTGACTCTACAAGATCGAAATGCAGA
genomic: GACAGCTCAATATCGACCATCAACAAAGATAAGgtattacctt ... tgttacacagGATGCCTAATAAACCACTTTCAGCATTGACTCTACAAGATCGAAATGCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttctaaacaaaaatgctaactgtattttttcatctatccccatgttacacagGATGCCTAATAAACCACTTTCAGCATTGACTCTACAAGATCGAAATGCAGAGGTTCAAATACAGGTCCACAGGAAATGGGAGTTTCGAGGTGCCGTTGAC
                tgctaac  putative branch site (score: 1)
                                       tccccat  putative PPT
                         tattttttcatctat  TA-rich tract