1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgctatctgctgtagaaatgcttcctctttttcctacatccagtatgtatcattctctgtcgtatgcatctgcgctcacttaagtgatcaactcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCTTATGGTGAAGAAAGCGGAGGCAGAAGCAGAGGCGAAATATCTTTCTGG
species | Zea mays |
transcript | GRMZM2G173858_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|78115187|gb|DV533575.1|DV533575
genomic: CCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|89106100|gb|DY576317.1|DY576317
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: CCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|78092689|gb|DV521063.1|DV521063
genomic: CCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|50337496|gb|CO532622.1|CO532622
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|67017254|gb|CO446003.1|CO446003
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|93283179|gb|EB675443.1|EB675443
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|149076480|gb|EE165106.2|EE165106
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|71419996|gb|DR804971.1|DR804971
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|37389363|gb|CF631901.1|CF631901
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|89251645|gb|DY623431.1|DY623431
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|149064912|gb|EE286584.2|EE286584
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|76290521|gb|DV030089.1|DV030089
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|91051607|gb|EB162025.1|EB162025
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: ACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|93011732|gb|EB637252.1|EB637252
genomic: ACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|71762921|gb|DR960858.1|DR960858
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCEST: gi|101385178|gb|EB814635.1|EB814635
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
EST: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAG CCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
genomic: TATCATCCCTGACGCTGCTGTTCGTAAGGCAATGAACGACATAAATGCAGgtattatgcc ... actcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCC
tgtatcattctctgtcgtatgcatctgcgctcacttaagtgatcaactcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCTTATGGTGAAGAAAGCGGAGGCAGAAGCAGAGGCGAAATATCTTTCTGG
cgctcac putative branch site (score: 6)
ctcctac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctatctgctgtagaaatgcttcctctttttcctacatccagtatgtatcattctctgtcgtatgcatctgcgctcacttaagtgatcaactcctacagCCCAAAGGCTTCAACTGGCAAGTGTTTACAAGGGAGAAGCAGAGAAGATCCTTATGGTGAAGAAAGCGGAGGCAGAAGCAGAGGCGAAATATCTTTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - -tctgctg
- - - - - - - - - tgcttcc
- - - - - - - - - - - - - - - - -ctacatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgca