1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaacgtaatgtcatgttatttcgttgccacgtgaaaaaaaaatctactgacgaggagagagggcctgctggtttttgctcaatgctggcagCTGTGCAAGGACGGCCCAGCGCTCCTCCTCCTGCCAGAAGAAGAGATCAAGTCCGTCCTCCTGCAGTCTGCCGGGCTCCATGGCGTGGCGCCGTGACGCC
species | Zea mays |
transcript | GRMZM2G172297_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGCCAGTTGCTTCAACGGGTTTTCCTTGGACATCTTCAAGGCTGAG CTGTGCAAGGACGGCCCAGCGCTCCTCCTCCTGCCAGAAGAAGAGATCAAGEST: gi|211157167|gb|FL101527.1|FL101527
genomic: CTGTTGCCAGTTGCTTCAACGGGTTTTCCTTGGACATCTTCAAGGCTGAGgtaaacgtaa ... atgctggcagCTGTGCAAGGACGGCCCAGCGCTCCTCCTCCTGCCAGAAGAAGAGATCAAG
EST: CTGTTGCCAGTTGCTTCAACGGGTTTTCCTTGGACATCTTCAAGGCTGAG CTGTGCAAGGACGGCCCAGCGCTCCTCCTCCTGCCAGAAGAAGAGATCAAGEST: gi|211157169|gb|FL101529.1|FL101529
genomic: CTGTTGCCAGTTGCTTCAACGGGTTTTCCTTGGACATCTTCAAGGCTGAGgtaaacgtaa ... atgctggcagCTGTGCAAGGACGGCCCAGCGCTCCTCCTCCTGCCAGAAGAAGAGATCAAG
EST: CTGTTGCCAGTTGCTTCAACGGGTTTTCCTTGGACATCTTCAAGGCTGAG CTGTGCAAGGACGGCCCAGCGCTCCTCCTCCTGCCAGAAGAAGAGATCAAG
genomic: CTGTTGCCAGTTGCTTCAACGGGTTTTCCTTGGACATCTTCAAGGCTGAGgtaaacgtaa ... atgctggcagCTGTGCAAGGACGGCCCAGCGCTCCTCCTCCTGCCAGAAGAAGAGATCAAG
aaaaaatctactgacgaggagagagggcctgctggtttttgctcaatgctggcagCTGTGCAAGGACGGCCCAGCGCTCCTCCTCCTGCCAGAAGAAGAGATCAAGTCCGTCCTCCTGCAGTCTGCCGGGCTCCATGGCGTGGCGCCGTGACGCC
tactgac putative branch site (score: 1)
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacgtaatgtcatgttatttcgttgccacgtgaaaaaaaaatctactgacgaggagagagggcctgctggtttttgctcaatgctggcagCTGTGCAAGGACGGCCCAGCGCTCCTCCTCCTGCCAGAAGAAGAGATCAAGTCCGTCCTCCTGCAGTCTGCCGGGCTCCATGGCGTGGCGCCGTGACGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG