1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagttgttacatcctctttaaattttggctctggtatttttcttattttcagtggtttttaatacttctagtgttgcctaaagtatttttgacatcatatccataatattctgcatgttcatgcagGGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG
species | Zea mays |
transcript | GRMZM2G171745_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAATGTAAGAGAACTCGAAGATTTCCTAATCAATGAGTGCATGTATTCG GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGEST: gi|149027222|gb|EE046433.2|EE046433
genomic: CAAATGTAAGAGAACTCGAAGATTTCCTAATCAATGAGTGCATGTATTCGgtgagttgtt ... gttcatgcagGGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG
EST: TCAATGAGTGCATGTATTCG GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGEST: gi|60398630|gb|DN231446.1|DN231446
genomic: TCAATGAGTGCATGTATTCGgtgagttgtt ... gttcatgcagGGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG
EST: TCAATGAGTGCATGTATTCG GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAGEST: gi|113702753|gb|EE680257.1|EE680257
genomic: TCAATGAGTGCATGTATTCGgtgagttgtt ... gttcatgcagGGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG
EST: CTCGAAGATTTCCTAATCAATGAGTGCATGTATTCG GGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG
genomic: CTCGAAGATTTCCTAATCAATGAGTGCATGTATTCGgtgagttgtt ... gttcatgcagGGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG
tgttgcctaaagtatttttgacatcatatccataatattctgcatgttcatgcagGGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG
ttttgac putative branch site (score: 3)
taaagtatttttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgttacatcctctttaaattttggctctggtatttttcttattttcagtggtttttaatacttctagtgttgcctaaagtatttttgacatcatatccataatattctgcatgttcatgcagGGTATCGTTAGAGGCAAACTGGATCAGCTGAGAAGGTGCTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA