1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcatgttcagccgtattattttgaggggaaaattgccttcttaatactgttcttcctctcataattttttacaattgcctcttcctgtatgtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTGCAGTTGAGGAGGAAATATTTCAGGCACCCGATATCCTGGGTCCTGCAT
species | Zea mays |
transcript | GRMZM2G171660_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTEST: gi|91054747|gb|EB165165.1|EB165165
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTEST: gi|76909704|gb|DV163493.1|DV163493
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGGATGGGTTCCTCAA AATGATGCATCTGEST: gi|148994746|gb|EE034217.2|EE034217
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTG
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTEST: gi|148966210|gb|EE017166.2|EE017166
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
actgttcttcctctcataattttttacaattgcctcttcctgtatgtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTGCAGTTGAGGAGGAAATATTTCAGGCACCCGATATCCTGGGTCCTGCAT
tcataattttttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgttcagccgtattattttgaggggaaaattgccttcttaatactgttcttcctctcataattttttacaattgcctcttcctgtatgtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTGCAGTTGAGGAGGAAATATTTCAGGCACCCGATATCCTGGGTCCTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA