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...tcatgttcagccgtattattttgaggggaaaattgccttcttaatactgttcttcctctcataattttttacaattgcctcttcctgtatgtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTGCAGTTGAGGAGGAAATATTTCAGGCACCCGATATCCTGGGTCCTGCAT
species | Zea mays |
transcript | GRMZM2G171660_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTEST: gi|149070733|gb|EE159146.2|EE159146
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTEST: gi|148966210|gb|EE017166.2|EE017166
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTEST: gi|76909704|gb|DV163493.1|DV163493
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGGATGGGTTCCTCAA AATGATGCATCTGEST: gi|149004610|gb|EE039124.2|EE039124
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTG
EST: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAA AATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
genomic: ATGGCACCATTTACAAATGGGACCGTACTTTGAGGGCATGGGTTCCTCAAgtgagtactg ... gtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTT
actgttcttcctctcataattttttacaattgcctcttcctgtatgtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTGCAGTTGAGGAGGAAATATTTCAGGCACCCGATATCCTGGGTCCTGCAT
tcataattttttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgttcagccgtattattttgaggggaaaattgccttcttaatactgttcttcctctcataattttttacaattgcctcttcctgtatgtatttatagAATGATGCATCTGGTAGCAAGGAAGATTACGCTGTTGAAGAGATGACTTTTGCAGTTGAGGAGGAAATATTTCAGGCACCCGATATCCTGGGTCCTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
-catgttc
- - - - - - - - - - - - - - - - -tgccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctg