Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtcaggagacaagttttatttcgtttctgtagctggttggaaacaactgtagtaatgtgtatcaatacttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG

Basic information

species Zea mays
transcript GRMZM2G171469_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171469_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g02850.1 (Oryza sativa), 3'ss of exon 3
gtttgtgtcaggagacaagttttatttc--------gtttctgtagctggtt------ggaaacaactgtagtaatgtgtatcaatacttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG
|||||||   ||| |||  || | ||||        ||||||| |  |  ||      |   | |   | | | ||| ||| | |||   | || ||| || ||||||| ||||| |||||||| ||||| || || |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||
gtttgtgggggga-acagtttatgtttctctgacttgtttctgcaatttttttcgaaggtgcaaagtaggaatgatgcgtaaccatatggcattgtagGTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAG

upper sequence: GRMZM2G171469_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ30530 (Selaginella moellendorffii), 3'ss of exon 3
gtttgtgtcaggagac-aagttttatttcgtttctgtagctggttggaaacaactgtagtaatgtgtatcaatacttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG
      || |||| |  |||| || |   |||||| ||   | |            |  |  | | | || |    |   | |||||  | |||    | ||| | ||||| || || ||   |||||||||||| ||  || ||||||| ||||||||||||||||||||  | |||
------gtgaggaaatgaagtcttttggagtttctctaaacgatc-----------tcttcctttttctctactgctttatgtagATTTTACAATCACTTCTTCTGGATTTACCCGGACTCTTGTTCTTCACGACGTATACTTTGCTAGTACTCTTCTGGGCTGAGATTTATCACCAG

upper sequence: GRMZM2G171469_T01 (Zea mays), 3'ss of exon 3
lower sequence: EFJ23006 (Selaginella moellendorffii), 3'ss of exon 3
gtttgtgtcaggagacaagttttatttcgtttctgtagctggttggaaacaactgtagtaatgtgtatcaatacttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG
           | ||  | ||  | |    || || || |  |   ||  | || |  |  | | | || |    |   | |||||  | |||    | ||| | ||||| || || ||   |||||||||||| ||| || ||||||| ||||||||||||||||||||  | |||
-----------gtgaggaattgaagtc---ttttggagtttctctaaacgatctct--tcctttttctctactgctttatgtagATTTTACAATCACTTCTTCTGGATTTACCCGGACTCTTGTTCTTCACGACGTACACTTTGCTAGTACTCTTCTGGGCTGAGATTTATCACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211394911|gb|FL373461.1|FL373461
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|211280348|gb|FL373309.1|FL373309
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|211494351|gb|FL425169.1|FL425169
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|78108686|gb|DV527104.1|DV527104
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|32870547|gb|CF010229.1|CF010229
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACATGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|211249778|gb|FL400508.1|FL400508
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGSCGGGCCTAGCGTTCTTCAAGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|149017006|gb|EE045660.2|EE045660
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|211330706|gb|FL425856.1|FL425856
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|91873273|gb|EB403230.1|EB403230
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|78108178|gb|DV526596.1|DV526596
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|71322323|gb|DR797838.1|DR797838
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|211015090|gb|FL429494.1|FL429494
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACATGTGCTTATTGATTTG
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTG
EST: gi|211278771|gb|FL390080.1|FL390080
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCAC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCAC
EST: gi|74237785|gb|DT645699.1|DT645699
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|50339374|gb|CO534500.1|CO534500
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|76018861|gb|DT946031.1|DT946031
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|5895618|gb|AW036864.1|AW036864
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|211503826|gb|FL372211.1|FL372211
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|211060391|gb|FL405187.1|FL405187
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCT
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCT
EST: gi|211461108|gb|FL380552.1|FL380552
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|50333507|gb|CO528633.1|CO528633
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|71770532|gb|DR968469.1|DR968469
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|149075806|gb|EE164341.2|EE164341
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACC
EST: gi|211504995|gb|FL428970.1|FL428970
EST:     GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG                         ATACTTCAACACGTGCTTATTGATTT
genomic: GGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAGgtttgtgtca ... ttccttttagATACTTCAACACGTGCTTATTGATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgtagctggttggaaacaactgtagtaatgtgtatcaatacttccttttagATACTTCAACACGTGCTTATTGATTTGCCGGGCCTAGCGTTCTTCACGACCTACGCTCTGCTAGTGCTCTTCTGGGCTGAGATTTACTATCAG
                                          tacttcctttt  CT-rich tract
                                    tatcaata  TA-rich tract