1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatctccttatttgataatgttaaatgttacataagttacttatatctcttaataatattatgatttttatatcctttttccatctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
species | Zea mays |
transcript | GRMZM2G171400_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGGCAATCGCACCATGCGGCCATGCCTATCTAGTGCAGTCAAGATACAG GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAGEST: gi|71449339|gb|DR830389.1|DR830389
genomic: GCGGCAATCGCACCATGCGGCCATGCCTATCTAGTGCAGTCAAGATACAGgtatctcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: GCGGCAATCGCACCATGCGGCCATGCCTATCTAGTGCAGTCAAGATACAG GCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAGEST: gi|91877865|gb|EB407822.1|EB407822
genomic: GCGGCAATCGCACCATGCGGCCATGCCTATCTAGTGCAGTCAAGATACAGgtatctcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
EST: GCGGCAATCGCACCATGCGGCCATGCCTATCTAGTGCAGTCAAGATACAG GCCAATGAATTTEST: gi|9028606|gb|BE238646.1|BE238646
genomic: GCGGCAATCGCACCATGCGGCCATGCCTATCTAGTGCAGTCAAGATACAGgtatctcctt ... catctaacagGCCAATGAATTT
EST: GCGGCAATCGCACCATGCGGCCATGCCTATCTAGTGCAGTCAAGATACAG GCCAATGAATTTAGAAAGGAGGAT
genomic: GCGGCAATCGCACCATGCGGCCATGCCTATCTAGTGCAGTCAAGATACAGgtatctcctt ... catctaacagGCCAATGAATTTAGAAAGGAGGAT
ttacttatatctcttaataatattatgatttttatatcctttttccatctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
tcttaat putative branch site (score: 91)
tttttatatccttttt putative PPT
tatatctcttaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctccttatttgataatgttaaatgttacataagttacttatatctcttaataatattatgatttttatatcctttttccatctaacagGCCAATGAATTTAGAAAGGAGGATTTCAAAGGCTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT