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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccacactgcatgtcctgttcgatcgtccagtgaacttgttcgtccaagcaactgcaacaagtgcagccttctgctacatgctcgccctgtgcagACGCTGTGCCGGATGTTCATCATCAACGCGGGGCAAGGGTTCAGGCTTCTCTGGAACACCGTCAAGTCGTTCCTGGACCCCAAGACCACGGCCAAGATCC

Basic information

species Zea mays
transcript GRMZM2G171349_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171349_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g04030.3 (Oryza sativa), 3'ss of exon 3
--gtaccacactgcatgt---cctgttcgatcgtccagtga-acttgttcgtccaagcaactgcaacaagtgcagccttctgctacatgctcgccctg-tgcagACGCTGTGCCGGATGTTCATCATCAACGCGGGGCAAGGGTTCAGGCTTCTCTGGAACACCGTCAAGTCGTTCCTGGACCCCAAGACCACGGCCAAGATCC
  | |  |  ||  ||||   | | || | | || ||  ||   || |   |||||      |   ||   |  |   |||| | | ||   |   || ||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||||
ctgaatgaatctaaatgtggacattttggtttgttcatcgatgtttatgattccaaatgttcgtt-cactcgttga--tctgttgc-tgtctgtattgatgcagACTCTGTGCCGGATGTTCATCATCAACGCCGGTCAAGGATTCAGGCTTCTCTGGAACACCGTCAAGTCCTTCCTCGATCCCAAGACCACAGCCAAGATCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481289|gb|EY254211.1|EY254211
EST:     GGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAG                         ACGCTGTGCCGGATGTTCATCATCAACGCGGGGCAAGGGTTCAGGCTTCTC
genomic: GGGACCTCATCGGACGCCTCCAGAAGATCGACGGAGACAACTACCCTGAGgtaccacact ... ccctgtgcagACGCTGTGCCGGATGTTCATCATCAACGCGGGGCAAGGGTTCAGGCTTCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtccaagcaactgcaacaagtgcagccttctgctacatgctcgccctgtgcagACGCTGTGCCGGATGTTCATCATCAACGCGGGGCAAGGGTTCAGGCTTCTCTGGAACACCGTCAAGTCGTTCCTGGACCCCAAGACCACGGCCAAGATCC
                                         ctcgccct  CT-rich tract