1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagttcaacttatgccaactttttctgtgctcttttttgtatgttgcaattctgacattggattgttttgttctcgccttggctacagTTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCATATGAGGGAAATGTTTCAAAATCCAGAATTTCTTCGCCAGCTGACATCGC
species | Zea mays |
transcript | GRMZM2G170843_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCATGAACCAG TTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCATEST: gi|32837431|gb|CD977109.1|CD977109
genomic: ACCATGAACCAGgtagttcaac ... ttggctacagTTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCAT
EST: TGATACAGATGATGCAGAACATTATGTCTGACCCACAGACCATGAACCAG TTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCAGEST: gi|60341162|gb|DN208135.1|DN208135
genomic: TGATACAGATGATGCAGAACATTATGTCTGACCCACAGACCATGAACCAGgtagttcaac ... ttggctacagTTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCAT
EST: TGATACAGATGATGCAGAACATTATGTCTGACCCACAGACCATGAACCAG TTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCATEST: gi|32837421|gb|CD977099.1|CD977099
genomic: TGATACAGATGATGCAGAACATTATGTCTGACCCACAGACCATGAACCAGgtagttcaac ... ttggctacagTTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCAT
EST: TGATACAGATGATGCAGAACATTATGTCTGACCCACAGACCATGAACCAG TTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCAGEST: gi|211529714|gb|FL481421.1|FL481421
genomic: TGATACAGATGATGCAGAACATTATGTCTGACCCACAGACCATGAACCAGgtagttcaac ... ttggctacagTTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCAT
EST: ACATTATGTCTGACCCACAGACCATGAACCAG TTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCAG
genomic: ACATTATGTCTGACCCACAGACCATGAACCAGgtagttcaac ... ttggctacagTTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCAT
tttttgtatgttgcaattctgacattggattgttttgttctcgccttggctacagTTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCATATGAGGGAAATGTTTCAAAATCCAGAATTTCTTCGCCAGCTGACATCGC
ttctgac putative branch site (score: 278)
ttttgttctcgcctt putative PPT
attgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttcaacttatgccaactttttctgtgctcttttttgtatgttgcaattctgacattggattgttttgttctcgccttggctacagTTGCTTAACCTCAACCCAAATGCACGCAACCTGATGGAATCAAACACTCATATGAGGGAAATGTTTCAAAATCCAGAATTTCTTCGCCAGCTGACATCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA