1 5' 3' | 2 5' 3' | 3 5' 3' |
...attcataacatgacatgttgcatctattcactgatcttagtccatgcaatacgagctgttttgacacattgttttcatatttttcttcgtctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGATTGCAAGAAGAGCAATCGACCTAGCAGAGAGGAGGCTGTTGAAGGATGG
species | Zea mays |
transcript | GRMZM2G170842_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAG TGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGAEST: gi|32839940|gb|CD979621.1|CD979621
genomic: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAGgttagtgaaa ... ctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
EST: TGATCCAAAAAATACTAGATGGAGTCATCACAATGGAGGATCGTGGCCAG TGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGAEST: gi|211128861|gb|FL461367.1|FL461367
genomic: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAGgttagtgaaa ... ctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
EST: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAG TGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGAEST: gi|78074262|gb|DV502696.1|DV502696
genomic: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAGgttagtgaaa ... ctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
EST: CTAGATGGAGTTATCACAATGGAGGATCGTGGCCAG TGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGAEST: gi|94473992|gb|EB702950.1|EB702950
genomic: CTAGATGGAGTTATCACAATGGAGGATCGTGGCCAGgttagtgaaa ... ctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
EST: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAG TGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGAEST: gi|60342420|gb|DN209393.1|DN209393
genomic: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAGgttagtgaaa ... ctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
EST: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAG TGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGAEST: gi|32835803|gb|CD975481.1|CD975481
genomic: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAGgttagtgaaa ... ctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
EST: TGATCCAAAAAATACTAGATGGAGTCATCACAATGGAGGATCGTGGCCAG TGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGAEST: gi|32841482|gb|CD981163.1|CD981163
genomic: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAGgttagtgaaa ... ctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
EST: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAG TGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGAEST: gi|211128860|gb|FL461366.1|FL461366
genomic: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAGgttagtgaaa ... ctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
EST: TGATCCAAAAAATACTAGATGGAGTTATCMCAATGGAGGATCGTGGCCAG TGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
genomic: TGATCCAAAAAATACTAGATGGAGTTATCACAATGGAGGATCGTGGCCAGgttagtgaaa ... ctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGA
gcaatacgagctgttttgacacattgttttcatatttttcttcgtctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGATTGCAAGAAGAGCAATCGACCTAGCAGAGAGGAGGCTGTTGAAGGATGG
ttttgac putative branch site (score: 98)
ttgttttcatattttt putative PPT
attgttttcatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcataacatgacatgttgcatctattcactgatcttagtccatgcaatacgagctgttttgacacattgttttcatatttttcttcgtctttctgcagTGCTTCTGTGGCTGCTGACTGCAGCCTGCATCAAAACTGGACGGCCGCAGATTGCAAGAAGAGCAATCGACCTAGCAGAGAGGAGGCTGTTGAAGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - catgaca
- - - - - - - -tgttgca
- - - - - - - - - - - - - ttcactg
- - - - - - - - - - - - - - - - - - - - tccatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg