1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtggtgagacagacagacctacgagaaccgaacaatcaaacgcgcacgcggcgtcaatggccactgccaccgtctctgtttgcttctcattaaccgcttgctgcctttgaccagAGGCATGTTCGACAAGGAGAGGATCGCGAGGATGAAGAAAGGCGTGATCATCGTGAACAACGCTCGAGGCGCGATCATGGACACGCAAGCCGTGGCGGAC
species | Zea mays |
transcript | GRMZM2G170602_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCAAGTGCGAGGTCGTCGTGATCAACATGCCGCTCACCGAGAAAACAAG AGGCATGTTCGACAAGGAGAGGATCGCGAGGATGAAGAAAGGCGTGATCATEST: gi|111197762|gb|EE295897.1|EE295897
genomic: CCCAAGTGCGACGTCGTCGTGATCAACATGCCGCTCACCGAGAAAACAAGgtggtgagac ... ctttgaccagAGGCATGTTCGACAAGGAGAGGATCGCGAGGATGAAGAAAGGCGTGATCAT
EST: CCCAAGTGCGACGTCGTCGTGATCAACATGCCGCTCACCGAGAAAACAAG AGGCATGTTCGACAAGGAGAGGATCGCGAGGATGAAGAAAGGCGTGATCATEST: gi|149085309|gb|EE174814.2|EE174814
genomic: CCCAAGTGCGACGTCGTCGTGATCAACATGCCGCTCACCGAGAAAACAAGgtggtgagac ... ctttgaccagAGGCATGTTCGACAAGGAGAGGATCGCGAGGATGAAGAAAGGCGTGATCAT
EST: CCCAAGTGCGACGTCGTCGTGATCAACATGCCGCTCACCGAGAAAACAAG AGGCATGTTCGACAAGGAGAGGATCGCGAGGATGAAGAAAGGCGTGATCAT
genomic: CCCAAGTGCGACGTCGTCGTGATCAACATGCCGCTCACCGAGAAAACAAGgtggtgagac ... ctttgaccagAGGCATGTTCGACAAGGAGAGGATCGCGAGGATGAAGAAAGGCGTGATCAT
gccactgccaccgtctctgtttgcttctcattaaccgcttgctgcctttgaccagAGGCATGTTCGACAAGGAGAGGATCGCGAGGATGAAGAAAGGCGTGATCATCGTGAACAACGCTCGAGGCGCGATCATGGACACGCAAGCCGTGGCGGAC
cattaac putative branch site (score: 4)
ctgccttt putative PPT
tcattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtgagacagacagacctacgagaaccgaacaatcaaacgcgcacgcggcgtcaatggccactgccaccgtctctgtttgcttctcattaaccgcttgctgcctttgaccagAGGCATGTTCGACAAGGAGAGGATCGCGAGGATGAAGAAAGGCGTGATCATCGTGAACAACGCTCGAGGCGCGATCATGGACACGCAAGCCGTGGCGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA