1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgaatcattccttttactgaacacttattctccaaacaatggatggaaggaggaggaaaatgcatttcaaagaagacgtaagtgggacaagaggatgctgGAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG
species | Zea mays |
transcript | GRMZM2G170291_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAGATTCAAAATATGCTG GAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATEST: gi|76014035|gb|DT941205.1|DT941205
genomic: TTCAGATTCAAAATATGCTGggacagctat ... gaggatgctgGAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAAT
EST: TTTCAAAGACTACCGTGTCTGGTGGTCTCTTTCAGATTCAAAATATGCTG GAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAAT
genomic: TTTCAAAGACTACCGTGTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGggacagctat ... gaggatgctgGAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAAT
gaaggaggaggaaaatgcatttcaaagaagacgtaagtgggacaagaggatgctgGAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG
atttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatcattccttttactgaacacttattctccaaacaatggatggaaggaggaggaaaatgcatttcaaagaagacgtaagtgggacaagaggatgctgGAATTTGTTCAACACGTGGATAAACCCTTAATCTGGTGTGGGGACTTGAATGTCAG
- - -cattcct
- - - - - - - - ctgaaca
- - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - atggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaagaag