1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcggttcctcaaatcttctacacaaatatggctcaaatgctcaataagttctaaaactttattggccatgccatcatcggtaatagctgactacttacgcacgatgccaatctgtaaatctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAATGCGCGGCCTGCCAGAAAACAGTGTATCCATTGGAGAAG
species | Zea mays |
transcript | GRMZM2G170034_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGAGCATCTTCAAACAAGAACGACCAG GCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAAEST: gi|76290732|gb|DV030300.1|DV030300
genomic: GTGGAGCATCTTCAAACAAGAACGACCAGgtgcggttcc ... atctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAA
EST: GTGGAGCATCTTCAAACAAGAACGACCAG GCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAAEST: gi|93014942|gb|EB640462.1|EB640462
genomic: GTGGAGCATCTTCAAACAAGAACGACCAGgtgcggttcc ... atctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAA
EST: GTGGAGCATCTTCAAACAAGAACGACCAG GCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAAEST: gi|87154844|gb|DY399633.1|DY399633
genomic: GTGGAGCATCTTCAAACAAGAACGACCAGgtgcggttcc ... atctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAA
EST: GTGGAGCATCTTCAAACAAGAACGACCAG GCAAAGGCTCCAAGCAAGCTATCATTTGCATTTTCTGGAACTCAAGATAAAEST: gi|21329958|gb|BQ485339.1|BQ485339
genomic: GTGGAGCATCTTCAAACAAGAACGACCAGgtgcggttcc ... atctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAA
EST: GTGGAGCATCTTCAAACAAGAACGACCAG GCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAAEST: gi|76923778|gb|DV169657.1|DV169657
genomic: GTGGAGCATCTTCAAACAAGAACGACCAGgtgcggttcc ... atctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAA
EST: GTGGAGCATCTTCAAACAAGAACGACCAG GCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAAEST: gi|87154664|gb|DY399453.1|DY399453
genomic: GTGGAGCATCTTCAAACAAGAACGACCAGgtgcggttcc ... atctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAA
EST: GTGGAGCATCTTCAAACAAGAACGACCAG GCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAAEST: gi|22545398|gb|BU097757.1|BU097757
genomic: GTGGAGCATCTTCAAACAAGAACGACCAGgtgcggttcc ... atctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAA
EST: GTGGAGCATCTTCAAACAAGAACGACCAG GCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAA
genomic: GTGGAGCATCTTCAAACAAGAACGACCAGgtgcggttcc ... atctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAA
atcatcggtaatagctgactacttacgcacgatgccaatctgtaaatctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAATGCGCGGCCTGCCAGAAAACAGTGTATCCATTGGAGAAG
tacttac putative branch site (score: 38)
tctctgc putative PPT
tgtaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcggttcctcaaatcttctacacaaatatggctcaaatgctcaataagttctaaaactttattggccatgccatcatcggtaatagctgactacttacgcacgatgccaatctgtaaatctctgcagGCAAAGGCTCCAAGCAAGCTATCATCTGCATTCTCTGGAACTCAAGATAAATGCGCGGCCTGCCAGAAAACAGTGTATCCATTGGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA