Sequence
atgc intronic sequence ATGC exonic sequence...gtttcccacaaatctgagaccatgattgtatcatagtcatcattatttccatatctctatttccttgtgatttctctgagccacttcacatttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G169914_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g19460.1 (Oryza sativa), 3'ss of exon 4
--gtttcccacaa-atctgagaccatgat-tgtatcatagtcatcattatttccatatctctatttccttgtgatttctctgagccacttcacatttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTG
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tacttgaccagattatccgagttctcattatttatcattgtt-ttgcaactattgttttgcttatgtgttttgactagccaaatctattttttaccta---cagGGCTTCTGCAATCTTTATAGGAGTGTATGAACCAACCAAAAGAAAACTGCTAGAAATGTTTCCTGAAAATTTGAGTGCTGTGGCTCATTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76015377|gb|DT942547.1|DT942547EST: TGTTAGCAATACAAGCAGAAGGAACCTGGATGTGTCACTTATCTTTTAAT CGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACT
genomic: TGTTAGCAATACAAGCAGAAGGAACCTGGATGTGTCACTTATCTTTTAATgtattgaagt ... tttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttccatatctctatttccttgtgatttctctgagccacttcacatttgttccagCGCTTCTGCAATTTTTGTTGGAGTATATGAACCAGCTAAAAGAAAACTACTGGAATTGTTTCCTAAAAATTTGAGCGCTATTGCTCATTTG
tttgttcc CT-rich tract
tctattt TA-rich tract