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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatagatatgacgatatgtgacagtaaaacaccaatcaagcaaatagccctgtccacactgcctttattatttatcgcatgctgctgggatttccacgtgcactggtctgggggctcatgacaattctttctgttcttgtagATACTTCTCAAGTTGGAGGATAACCGGTTGATCGAGACAGTGGGGATTCCTGTCGATGATGACAACAAAGGCTCTTCTAGGCTCACTGCCTGTGTTTCAT

Basic information

species Zea mays
transcript GRMZM2G168412_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168412_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g74190.1 (Oryza sativa), 3'ss of exon 3
gtcatagatatgacgatatgtgacagtaaaacaccaatcaagcaaatagccctgtccacactgcctttattatttatcgcatgctgctgggatttccacgtgcactggtctgggggctc---atgacaattctttctgttcttgtagATACTTCTCAAGTTGGAGGATAACCGGTTGATCGAGACAGTGGGGATTCCTGTCGATGATGACAACAAAGGCTCTTCTAGGCTCACTGCCTGTGTTTCAT---
                                        |  || || |   |  |  ||     ||  ||||   | | |||     | || | | | ||||    | || |||||    |  | |  ||  | | | |||| |||||||||||||||||||||||||| | |||||||| ||||| ||||| |||||||||||||||||   |||| | || || ||||||||||| |||||||   
----------------------------------------aaaaactatcatcgagcgtac-atggttgctattgtacacgtgc-----gcatcttcccttgcaa-aatttgagggctataaactagatctccctttatccttgcagATACTTCTCAAGTTGGAGGATAACAGATTGATCGAAACAGTAGGGATCCCTGTCGATGATGACAA---AGGCCCGTCAAGACTCACTGCCTGCGTTTCATCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13150086|gb|BG320408.1|BG320408
EST:     GCCGGTCGCCAGTGCACCACGCCGTCACAGCCTCGGATGGCACTACCAAG                         ATACTTCTCAAGTTGGAGGATAACCGGTTGATCGAGACAGTGGGGATTCCT
genomic: GCCGGTCGCCAGTGCACCACGCCGTCACAGCCTCGGATGGCACTACCAAGgtcatagata ... gttcttgtagATACTTCTCAAGTTGGAGGATAACCGGTTGATCGAGACAGTGGGGATTCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttccacgtgcactggtctgggggctcatgacaattctttctgttcttgtagATACTTCTCAAGTTGGAGGATAACCGGTTGATCGAGACAGTGGGGATTCCTGTCGATGATGACAACAAAGGCTCTTCTAGGCTCACTGCCTGTGTTTCAT
                                     ttctttctgttcttgt  CT-rich tract
                                   aattcttt  TA-rich tract