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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttattcatcttcctgagtgtttgttgtgtgcctcacaaaaactgctacttagctaaagtctcatatcagAGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCAATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAG

Basic information

species Zea mays
transcript GRMZM2G168249_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168249_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 3'ss of exon 5
gtatgtttattcatcttc-ctgagtgttt-gttgtgtgcctcacaaaaactgctacttagctaaagtctcatatcagAGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCAATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAG
|||||||  | ||| ||  | |  |||||       |  ||     ||||||||  | || | ||||||||| ||||||||||||| ||||||||   |||||| ||||||||||| |||||  | ||||| |||||||||||||||||||| ||||||||||| ||||||||||||
gtatgttagtacatttttgcagcttgtttcaaccactttcttttgcaaactgcttttgagttgaagtctcatgtcagAGAAATGGAGGAGATATCTGCATTTGTGAAGGATGCAATTTGCAATGATCAATGTCTAGGACGCTGCCTTTATATTCATGGTGTACCAGGCACTGGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30052379|gb|AI065668.2|AI065668
EST:     GTCATTGCCTTGCAGAGATAA                         AGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCA
genomic: GTCATTGCCTTGCAGAGATAAgtatgtttat ... ctcatatcagAGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCA
EST: gi|31354612|gb|CD438969.1|CD438969
EST:     GCAACCCTGTTATTGGCAACTCTTCCTAAGTCATTGCCTTGCAGAGATAA                         AGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCA
genomic: GCAACCCTGTTATTGGCAACTCTTCCTAAGTCATTGCCTTGCAGAGATAAgtatgtttat ... ctcatatcagAGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtgtttgttgtgtgcctcacaaaaactgctacttagctaaagtctcatatcagAGAAATGGATGAGATATCAATATTTGTAAAGGATGCAATCTGCAACAACCAATGCCTAGGACGCTGCCTTTATATACATGGTGTACCTGGCACTGGCAAG
                                    agctaaa  putative branch site (score: 3)
                    acaaaaa  TA-rich tract