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...ttgtttgaaactaacatttagtttctgtctgtaagtggaatactgaatagtagtaccattgattgttttatgttgtttaagctttttctttattgtgcagGTTAATGATGCCATTATAGTTGGAGACAAGCTTGTTTCCTGCTCCTCAGACACTACAATAAAG
species | Zea mays |
transcript | GRMZM2G167999_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATAATGGGGATGCAAGCTTCTCAGGAACTTTCGAGTCTCATGTTGATTGG GTTAATGATGCCATTATAGTEST: gi|22489370|gb|BU049293.1|BU049293
genomic: ATAATGGGGATGCAAGCTTCTCAGGAACTTTCGAGTCTCATGTTGATTGGgtatgctttt ... tattgtgcagGTTAATGATGCCATTATAGT
EST: ATAATGGGGATGCAAGCTTCTCAGGAACTTTCGAGTCTCATGTTGATTGG GTTAATGATGCCATTATAGNTGGAGACAAGCTTGTTTCCTGCTCCTCAGACEST: gi|88758366|gb|DY542735.1|DY542735
genomic: ATAATGGGGATGCAAGCTTCTCAGGAACTTTCGAGTCTCATGTTGATTGGgtatgctttt ... tattgtgcagGTTAATGATGCCATTATAGTTGGAGACAAGCTTGTTTCCTGCTCCTCAGAC
EST: ATAATGGGGATGCAAGCTTCTCAGGAACTTTCGAGTCTCATGTTGATTGG GTTAATGATGCCATTATAGTTGGAGACAAGCTTGTTTCCTGCTCCTCAGACEST: gi|60397544|gb|DN230360.1|DN230360
genomic: ATAATGGGGATGCAAGCTTCTCAGGAACTTTCGAGTCTCATGTTGATTGGgtatgctttt ... tattgtgcagGTTAATGATGCCATTATAGTTGGAGACAAGCTTGTTTCCTGCTCCTCAGAC
EST: ATAATGGGGATGCAAGCTTCTCAGGAACTTTCGAGTCTCATGTTGATTGG GTTAATGATGCCATTATAGTTGGAGACAAGCTTGTTTCCTGCTCCTCAGAC
genomic: ATAATGGGGATGCAAGCTTCTCAGGAACTTTCGAGTCTCATGTTGATTGGgtatgctttt ... tattgtgcagGTTAATGATGCCATTATAGTTGGAGACAAGCTTGTTTCCTGCTCCTCAGAC
aatagtagtaccattgattgttttatgttgtttaagctttttctttattgtgcagGTTAATGATGCCATTATAGTTGGAGACAAGCTTGTTTCCTGCTCCTCAGACACTACAATAAAG
cattgat putative branch site (score: 4)
ctttttctttattgt putative PPT
ttttatgttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttgaaactaacatttagtttctgtctgtaagtggaatactgaatagtagtaccattgattgttttatgttgtttaagctttttctttattgtgcagGTTAATGATGCCATTATAGTTGGAGACAAGCTTGTTTCCTGCTCCTCAGACACTACAATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC