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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttaattaacttgctgaatgtatggtctataaataccaaaggacttatagactaacttggctttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGGGTG

Basic information

species Zea mays
transcript GRMZM2G167886_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G167886_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os09g12550.1 (Oryza sativa), 3'ss of exon 4
gtaggttaattaacttgctgaatgtatggtctataaataccaaaggacttatagactaacttggctttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGGGTG
||| | |||   |  |||||||| |||| |||   ||    |||  |||||  ||||||||   |||| || | ||||||||||||||||| |||||||| ||||| |||||||||||||| ||||| ||  |||||||||||   |||||||||||||||
gtaagctaaaggatatgctgaatatatgttctg--aacggaaaaaaactta--gactaactacacttt-tctctagTGGTGACCATACTGTTAAAATAATCGATTGCCAAACTGGGAAATGTTTGAAAGTGTTGCTTGGACATTGGCGCACTCCATGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18385319|gb|BM418518.1|BM418518
EST:     ACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACA                         TGGTGACCATACTGTCCAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
genomic: ACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAgtaggttaat ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
EST: gi|87298785|gb|DY470788.1|DY470788
EST:     ACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACA                         TGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
genomic: ACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAgtaggttaat ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
EST: gi|78092063|gb|DV520437.1|DV520437
EST:     ACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACA                         TGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
genomic: ACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAgtaggttaat ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
EST: gi|22489334|gb|BU049257.1|BU049257
EST:     ACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACA                         TGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA
genomic: ACTATTGCAGCTGCATTTAGTACAGATGGGAGAGTACTTGCATCTACACAgtaggttaat ... ttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatggtctataaataccaaaggacttatagactaacttggctttatccccagTGGTGACCATACTGTCAAAATAATTGATTGGCAAACTGGGAAATGCTTGAATGTACTGCTTGGACATCACCGCACTCCATGGGTG
                                gactaac  putative branch site (score: 1)
                                           ctttatcccc  putative PPT
        tctataaata  TA-rich tract