1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttatgtatgattagttttcttttatcatcttcagcatgctggcaattcagcattttcaatcaaatagtgttctgatttcatgttgaactatttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTGTCTATGAGCCAGACTCGCCTTTAACTCCTGAACCAGCGACACAACGCCT
species | Zea mays |
transcript | GRMZM2G166903_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTGEST: gi|76294267|gb|DV033835.1|DV033835
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
EST: TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTGEST: gi|89760628|gb|DY688960.1|DY688960
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
EST: TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTGEST: gi|50326138|gb|CO521264.1|CO521264
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
EST: TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTGEST: gi|149085755|gb|EE175275.2|EE175275
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
EST: TTTCAATGATATGATCNNNNNNNTGGATCAATTGCCTTCTTACACAGGAG GGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
genomic: TTTCAATGATATGATCAAAAAAATGGATCAATTGCCTTCTTACACAGGAGgtcagtgctc ... tttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTG
ttcagcattttcaatcaaatagtgttctgatttcatgttgaactatttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTGTCTATGAGCCAGACTCGCCTTTAACTCCTGAACCAGCGACACAACGCCT
ttctgat putative branch site (score: 50)
ctatttc putative PPT
attttcaatcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgtatgattagttttcttttatcatcttcagcatgctggcaattcagcattttcaatcaaatagtgttctgatttcatgttgaactatttcatgcagGGGACCAAGGTTTTCTAAATTCATATTATTCTGATTTTGCCAACTCCCGTGTCTATGAGCCAGACTCGCCTTTAACTCCTGAACCAGCGACACAACGCCT
- atgtatg
- - - - - - - - - - - - - - - - agcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgaa