Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaataggaagcctagctactgccctcagcatgtcctgccagcaataatggtcttgtgatatatatatatctatctattcacttcacagCATGTCCTCTGGGAGCCTACTGCCCTCAGTCCACTCTGAATAAAACAACTGGAATCTGTGATCC

Basic information

species Zea mays
transcript GRMZM2G166889_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21330557|gb|BQ485938.1|BQ485938
EST:     AGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATAC                         CATGTCCTCTGGGAGCCTACTGCCCTCAGTCCACTCTG
genomic: AGGTTGCTGTGCTGGCTTCTTTTGCCCTCATGGGCTCACTTGCATGATACgtaagtaata ... cacttcacagCATGTCCTCTGGGAGCCTACTGCCCTCAGTCCACTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgccagcaataatggtcttgtgatatatatatatctatctattcacttcacagCATGTCCTCTGGGAGCCTACTGCCCTCAGTCCACTCTGAATAAAACAACTGGAATCTGTGATCC
                                           ttcacttc  CT-rich tract
                      tgatatatatatatct  TA-rich tract