1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aatctgtaattaaaaggattctcattgatgttatttttcattttcctctttcggagcactcattatggtgtttcacatcaagctttgctatctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT
species | Zea mays |
transcript | GRMZM2G166345_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|211305838|gb|FL207346.1|FL207346
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATEST: gi|9953234|gb|BE639817.1|BE639817
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGAT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|211165089|gb|FL207337.1|FL207337
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGEST: gi|71436812|gb|DR817862.1|DR817862
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTG
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|93012239|gb|EB637759.1|EB637759
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|211165084|gb|FL207332.1|FL207332
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATEST: gi|91874367|gb|EB404324.1|EB404324
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGAT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|71320983|gb|DR797210.1|DR797210
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|211165094|gb|FL207342.1|FL207342
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCEST: gi|211307866|gb|FL207361.1|FL207361
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGC
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGEST: gi|211307864|gb|FL207359.1|FL207359
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGG
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAEST: gi|93280899|gb|EB673163.1|EB673163
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAA
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|211165091|gb|FL207339.1|FL207339
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGGTCAAGTCTEST: gi|4753387|gb|AI657292.1|AI657292
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|88756567|gb|DY540708.1|DY540708
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|89248432|gb|DY620218.1|DY620218
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|87155285|gb|DY400074.1|DY400074
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|32913166|gb|CF017978.1|CF017978
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACNTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGGCCAAGTCEST: gi|91873663|gb|EB403620.1|EB403620
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACAC-TGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTC
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|94477637|gb|EB706595.1|EB706595
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|211165095|gb|FL207343.1|FL207343
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGGCCAAGTCTEST: gi|149110255|gb|EE190312.2|EE190312
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|86469720|gb|DY236090.1|DY236090
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAAAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGAGACCAAGTCTEST: gi|76286901|gb|DV026469.1|DV026469
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|61118563|gb|DN559524.1|DN559524
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|211533214|gb|FL395813.1|FL395813
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGRTGGACTACATTCAG AACACTGTTGGTGCTGGEST: gi|211305849|gb|FL207357.1|FL207357
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGG
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGGTCAAGTCTEST: gi|211305843|gb|FL207351.1|FL207351
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTAEST: gi|211305844|gb|FL207352.1|FL207352
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTA
EST: GCGAGTTGCAGAAATATCCACATGTTCTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGEST: gi|211165087|gb|FL207335.1|FL207335
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTG
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGGCCAAGTCTEST: gi|211098810|gb|FL225932.1|FL225932
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCEST: gi|78112560|gb|DV530954.1|DV530954
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGC
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTEST: gi|26559559|gb|CA831794.1|CA831794
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
EST: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG AACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
genomic: GCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAGgtctaagatt ... tctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCT
ctctttcggagcactcattatggtgtttcacatcaagctttgctatctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT
atctgat putative branch site (score: 162)
tcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctgtaattaaaaggattctcattgatgttatttttcattttcctctttcggagcactcattatggtgtttcacatcaagctttgctatctgatgcagAACACTGTTGGTGCTGGTACAACTTTGCAAAAGATAAATGTGACCAAGTCTGACTTTGATCCACCTTCT
- - - - - - - - - - - - -tgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - ggagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgcta