1 5' 3' | 2 5' 3' | 3 5' 3' |
...ataaagaaaagggtccctgtagatcatcattgatctttaatgttggaactagcaacgtaaaacactgaagttgttggcactgatgtccatcgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGAACCTGAAGCTACTGACCAAGGGTCTCCCTAACAGCAAACTGGCGACTT
species | Zea mays |
transcript | GRMZM2G166145_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCT GAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGEST: gi|86470823|gb|DY237193.1|DY237193
genomic: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagttttt ... cgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
EST: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCT GAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGEST: gi|89764194|gb|DY691090.1|DY691090
genomic: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagttttt ... cgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
EST: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCT GAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGEST: gi|5005950|gb|AI712012.1|AI712012
genomic: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagttttt ... cgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
EST: AACATTTTTGCGATTGGTGACATCACAGATATTCCT GAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGAGGCGAAGEST: gi|5650135|gb|AI920495.1|AI920495
genomic: AACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagttttt ... cgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
EST: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCT GAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGEST: gi|86470206|gb|DY236576.1|DY236576
genomic: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagttttt ... cgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
EST: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCT GAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGEST: gi|37377793|gb|CF625537.1|CF625537
genomic: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagttttt ... cgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
EST: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCT GAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGEST: gi|71431205|gb|DR812255.1|DR812255
genomic: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagttttt ... cgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
EST: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCT GAAATCAAACAAAGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGEST: gi|76915401|gb|DV165968.1|DV165968
genomic: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagttttt ... cgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
EST: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCT GAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
genomic: TGAAAGGTTTTAATAACATTTTTGCGATTGGTGACATCACAGATATTCCTgtaagttttt ... cgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAG
gaactagcaacgtaaaacactgaagttgttggcactgatgtccatcgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGAACCTGAAGCTACTGACCAAGGGTCTCCCTAACAGCAAACTGGCGACTT
cactgat putative branch site (score: 101)
taaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaagaaaagggtccctgtagatcatcattgatctttaatgttggaactagcaacgtaaaacactgaagttgttggcactgatgtccatcgctgttcagGAAATCAAACAAGGGTACCTCGCCCAGAAGCACGCGCTGCTAGTGGCGAAGAACCTGAAGCTACTGACCAAGGGTCTCCCTAACAGCAAACTGGCGACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -aagaaaa
- - - - - - - ccctgta
- - - - - - - - - - - - - - - - - - - aatgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgt