1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgctcatactaactattgaggacttttgacttctacactgacatatgatggtcttgatatcctcccgtttttttttttttttgctgcagCTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTCAAACTCGAGATGCTGGCTCAACTGCCTCAACAGCTATTATTGTAGGTGA
species | Zea mays |
transcript | GRMZM2G166035_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTG CTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTCEST: gi|6826953|gb|AW330596.1|AW330596
genomic: CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTGgtatgctcat ... tttgctgcagCTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC
EST: CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTG CTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTCEST: gi|31359010|gb|CD443367.1|CD443367
genomic: CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTGgtatgctcat ... tttgctgcagCTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC
EST: CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTG CTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC
genomic: CAATTTAATCAAACACCCAAAGTTCATCACTGATACCAAGGCCGCTATTGgtatgctcat ... tttgctgcagCTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTC
acactgacatatgatggtcttgatatcctcccgtttttttttttttttgctgcagCTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTCAAACTCGAGATGCTGGCTCAACTGCCTCAACAGCTATTATTGTAGGTGA
tcttgatatcctcccg CT-rich tract
tttttttttttttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcatactaactattgaggacttttgacttctacactgacatatgatggtcttgatatcctcccgtttttttttttttttgctgcagCTGAAACTTACAACCGCACAGATTCAGAATTTCTGAAAGCTGATAGCACTCAAACTCGAGATGCTGGCTCAACTGCCTCAACAGCTATTATTGTAGGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG