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...tttcttaatgtcggtagttttcaccctgtaaaggaaggggcatgctattttcaattatgaaaaataatgcctgcaaactttgtttttgcccctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCCTCTCTAAGCCTGCCAAGGGTGTGGAGAAATCTTTCTCTCTTCTTTCGC
species | Zea mays |
transcript | GRMZM2G165747_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCEST: gi|31354595|gb|CD438952.1|CD438952
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTC
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCEST: gi|211335854|gb|FL127557.1|FL127557
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTC
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCEST: gi|211327184|gb|FL127493.1|FL127493
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTC
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCEST: gi|211329358|gb|FL127511.1|FL127511
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTC
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCEST: gi|211331527|gb|FL127536.1|FL127536
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTC
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCEST: gi|211329369|gb|FL127522.1|FL127522
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTC
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCEST: gi|211329363|gb|FL127516.1|FL127516
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTC
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCEST: gi|211331524|gb|FL127533.1|FL127533
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTC
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCEST: gi|28930989|gb|CB334350.1|CB334350
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTC
EST: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCG CTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCA
genomic: TCACATACGCTTCTCACAAGGCTGTTTCTGAGTACAAGGAGGCAAAAGCGgtatgttgct ... cctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCA
tattttcaattatgaaaaataatgcctgcaaactttgtttttgcccctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCCTCTCTAAGCCTGCCAAGGGTGTGGAGAAATCTTTCTCTCTTCTTTCGC
ctttgtttttgcccct CT-rich tract
tcaattatgaaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcttaatgtcggtagttttcaccctgtaaaggaaggggcatgctattttcaattatgaaaaataatgcctgcaaactttgtttttgcccctcatgcagCTCGGTATTGATACTGTCCCAGTGCTTGTTGGACCAGTGTCATACTTGCTCCTCTCTAAGCCTGCCAAGGGTGTGGAGAAATCTTTCTCTCTTCTTTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA