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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacgaacataggcgctcaagtttggacttgctatgagttcgttgctctgtcactatgcgtggtgatgaactctgtaacgttggaagtaattggtttgcccttcttctttttgtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAA

Basic information

species Zea mays
transcript GRMZM2G165535_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71449147|gb|DR830197.1|DR830197
EST:     GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG                         TTATTACTAATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: gi|74245816|gb|DT653730.1|DT653730
EST:     GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG                         TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: gi|71299719|gb|DR785870.1|DR785870
EST:     GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG                         TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: gi|32919710|gb|CF024522.1|CF024522
EST:     GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG                         TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: gi|14646044|gb|BI180233.1|BI180233
EST:     GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG                         TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: gi|71773498|gb|DR971398.1|DR971398
EST:     GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG                         TTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
genomic: GGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA
EST: gi|32801826|gb|CD954062.1|CD954062
EST:     GATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG                         TTATTACTGAATATGACTACGTCTTCTCCGAAAACGGCCTGGATGCACACA
genomic: GATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAGgtgacgaaca ... gtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactctgtaacgttggaagtaattggtttgcccttcttctttttgtttttgcagTTATTACTGATTATGATTACGTCTTCTCCGAAAACGGCCTGGTTGCACACAAAAATGGCCAACTAATTGGAACCCAA
     ctgtaac  putative branch site (score: 3)
                       ttggtttgcccttctt  putative PPT
                                     ttctttttgttttt  TA-rich tract