Sequence
atgc intronic sequence ATGC exonic sequencegtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaataagttgttataccagcagAATGCCAGCCAGAGAGAACTGGAGAGACAAGATGTTCCAGTTACTAGACACCCAGAGTTCCGCTACAAAACTGAATTTCAGAGTCATGAACCTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G165418_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g36770.1 (Oryza sativa), 3'ss of exon 2
gtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaat--aagttgttataccagcagAATGCCAGCCAGAGAGAACTGGAGAGACAAGATGTTCCAGTTACTAGACACCCAGAGTTCCGCTACAAAACTGAATTTCAGAGTCATGAACCTGAG
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gtaagcaccattagt-tgaacttctcttg--ctcaatttcattattttatactcatgaaagtctatctgttagcagAATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACACCCAGAGTTTCGCTACAAAAGTGAATTTCAGAGTCATGAACCTGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31352864|gb|CD437221.1|CD437221EST: ATGTTCGGGAT AATGCCAGCCAGAGAGAACTGGAGAGACCTTATGTTCCAGTTACTAGACAC
genomic: ATGTTCGGGATgtaagcacca ... ataccagcagAATGCCAGCCAGAGAGAACTGGAGAGACAAGATGTTCCAGTTACTAGACAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acttatcttggttttgattttaatatttttccctaataagttgttataccagcagAATGCCAGCCAGAGAGAACTGGAGAGACAAGATGTTCCAGTTACTAGACACCCAGAGTTCCGCTACAAAACTGAATTTCAGAGTCATGAACCTGAG
ccctaat putative branch site (score: 3)
ttttgattttaatatt TA-rich tract