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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagtctaacagatcactcttctcagttgtttctttttaaataatatgtgcctcctcatgagttaggcacttattctgtaaattctttctatttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG

Basic information

species Zea mays
transcript GRMZM2G165357_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 4
--cagtctaacagatcactcttctcagttgtttctttttaaata-atatgtgcctcctcatgagttaggcacttattctgtaaattctttctatttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG
   |    |  | |    | ||   |   |||   |  ||  |  | | ||   |  |  |||| ||   |   ||| || |  || ||| ||||  ||| |||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
cttaagacactaaactttttttgcgatcagttctatcgtatcttcaaaagtatattattgtgagatattaaa--attttg-accttttttttattcatttcagATGTCACCCAGCCCCTGCTTGTGGAGGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTCAAG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA11G15010.1 (Glycine max), 3'ss of exon 4
cagtctaaca-gatcactcttctcagttgtttc-tttttaaataatatgtgcctcctcatgagttaggcacttattctgtaaattctttctatttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG
 |   ||||| ||    |  | |||| ||     ||| |      | |  |     |  | | |||   |       ||||  ||  || |   ||    ||||||||| ||||   |  |  | || ||||| ||||||||||| ||||| ||||||||||| ||||||||||||||  |||||||||| |||
-aacataacatgaatgattctatcaggtgcagagtttctctgcgtttttagatgtgttttaatttaattaaaatgcatgtacttttcttttccctgaac-agATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 3
cagtctaaca-gatcactcttctcagttgtttc-tttttaaataatatgtgcctcctcatgagttaggcacttattctgtaaattctttctatttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG
 |   | ||| ||    |  | |||  ||  |  |||||   |  | |  |   | |  | | |||   |       | ||  ||  || |   ||    ||||||||| ||||   |  |  | || ||||| ||||||||||| ||||| ||||| ||||| ||||| ||||||||  |||||||||| |||
-aacatgacatgaatgatgctatcatgtgcatagtttttctgtgtttttagatgcgttgtaatttaattaaaatgcatatacttttattttccctgaac-agATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32829264|gb|CD968942.1|CD968942
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|149070503|gb|EE158907.2|EE158907
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|211182716|gb|FL410032.1|FL410032
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|32787712|gb|CD936614.1|CD936614
EST:     AACCTGAAGAAGTGGATTGGCCACCCAAGNATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: AACCTGAAGAAGTGGATTGGCCACCCAAG-ATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|32829447|gb|CD969125.1|CD969125
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|149082965|gb|EE172201.2|EE172201
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|60394382|gb|DN227252.1|DN227252
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|32797525|gb|CD949761.1|CD949761
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|149070980|gb|EE159385.2|EE159385
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|32914071|gb|CF018883.1|CF018883
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|71444250|gb|DR825300.1|DR825300
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|32796729|gb|CD948965.1|CD948965
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|60339871|gb|DN206844.1|DN206844
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|32799379|gb|CD951615.1|CD951615
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|32798044|gb|CD950280.1|CD950280
EST:     CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|15100352|gb|BI396143.1|BI396143
EST:     GAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
genomic: GAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTT
EST: gi|211283078|gb|FL322113.1|FL322113
EST:     CAACCTGAAGAAGTGGATTGGCCACTCAAGATTTGAGCTCATCCGTCATG                         ATGTCACCGAGCCGCTTCTT
genomic: CAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATGgtaaataact ... tttgttttagATGTCACCGAGCCGCTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgcctcctcatgagttaggcacttattctgtaaattctttctatttgttttagATGTCACCGAGCCGCTTCTTGTGGAAGTTGACCAAATCTATCACCTTGCTTGCCCTGCTTCACCAATCTTCTACAAGCACAACCCTGTTAAG
                                    ttctttctatttgttt  CT-rich tract
                                taaattctttctattt  TA-rich tract