Sequence
atgc intronic sequence ATGC exonic sequencegtaaaatgttaacttaccgttgtcaccagcattttaatttccatttgaaacataaaggtgttaacacttaactgacccttcacctttatgtggacttgtcctttgttctatctgaaatagcttaccatgtactgacttatccttgtctcttccttagTTTCTGTGCAGCTTTACTCTCCAGATCGACCTGTAGTTGACACTGCAGAGGTGTTTCTATGGCTTATGGCTGTTGGCACAGTACTTGGTGCTTCCTACTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g51430.1 (Oryza sativa), 3'ss of exon 4
gtaaaatgttaacttaccgttgtcaccagcattttaatttccatttgaaacataaaggtgttaacacttaactgacccttcacctttatgtggacttgtcctttgttctatctgaaatagcttaccatgtactgacttatccttgtctcttcc-ttagTTTCTGTGCAGCTTTACTCTCCAGATCGACCTGTAGTTGACACTGCAGAGGTGTTTCTATGGCTTATGGCTGTTGGCACAGTACTTGGTGCTTCCTACTG
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gtaattcgttaactcactgtgggcacctatacttccattttcatgcgaga---gaatgttttt---tttaatt--ctctttggc---atggaatctggctatttgttcaatctaaaatatcttag-------tgacttaaccatgtatcttcccttagTTTCTGTGCAGCAATACTCTCCAGATCGTCCTGTAGTTGATACTGCAGAGGTATTCCTTTGGCTTATGGCTGTTGGTACTGTCCTTTGTGCATCATACTG
upper sequence: GRMZM2G165351_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G39500.1 (Glycine max), 3'ss of exon 4
gtaaaatgttaacttaccgttgtcaccagcattttaatttccatttgaaacataaaggtgttaacacttaactgacccttcacctttatgtggacttgtcctttgttctatctgaaatagcttaccatgtactgacttatccttgtctcttccttagTTTCTGTGCAGCTTTACTCTCCAGATCGACCTGTAGTTGACACTGCAGAGGTGTTTCTATGGCTTATGGCTGTTGGCACAGTACTTGGTGCTTCCTACTG
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-----gtat-atttcactttctctgtgaatatgtatctattcttttgtgat-tagtatggctttcatttgtcacagcaaaatttgaaataactactttatattttgattctttatatgattattctttgcatttctgcatgtatgtccactctcaagTGTCGGTGCAGTTGTATTCTCCATTGCGTCCATTGGTTGATGTTGCAGAAGTGTTTTTATGGCTTATGGCTGTTGGTACCATTCTCTGTGCTTCTTACTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttctatctgaaatagcttaccatgtactgacttatccttgtctcttccttagTTTCTGTGCAGCTTTACTCTCCAGATCGACCTGTAGTTGACACTGCAGAGGTGTTTCTATGGCTTATGGCTGTTGGCACAGTACTTGGTGCTTCCTACTG
tactgac putative branch site (score: 1)
cttatccttgtctctt CT-rich tract
tgaaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaatgttaacttaccgttgtcaccagcattttaatttccatttgaaacataaaggtgttaacacttaactgacccttcacctttatgtggacttgtcctttgttctatctgaaatagcttaccatgtactgacttatccttgtctcttccttagTTTCTGTGCAGCTTTACTCTCCAGATCGACCTGTAGTTGACACTGCAGAGGTGTTTCTATGGCTTATGGCTGTTGGCACAGTACTTGGTGCTTCCTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT