1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttcatttaattattttctttgggctagggagtggtgctctcactttacgtcttccatttccttgtttttgaaactaaatttccatggatgcaattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAATTGTTAACAATCTAATGAAAGCTCCAGAGTTGGCTACCACGATGCAAGA
species | Zea mays |
transcript | GRMZM2G165195_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCG CAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAAEST: gi|76010550|gb|DT937720.1|DT937720
genomic: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttt ... caattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
EST: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCG CAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAAEST: gi|71765371|gb|DR963308.1|DR963308
genomic: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttt ... caattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
EST: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCG CAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAAEST: gi|32867970|gb|CF007652.1|CF007652
genomic: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttt ... caattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
EST: AACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCG CAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAAEST: gi|211495220|gb|FL000400.1|FL000400
genomic: AACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttt ... caattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
EST: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCG CAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAAEST: gi|78074982|gb|DV503416.1|DV503416
genomic: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttt ... caattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
EST: CTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCG CAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAAEST: gi|76281952|gb|DV021520.1|DV021520
genomic: CTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttt ... caattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
EST: AAATTCAGTATCAATGCACCTTGGAGAAATTGTCG CAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAAEST: gi|32867969|gb|CF007651.1|CF007651
genomic: AAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttt ... caattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
EST: AACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCG CAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAAEST: gi|76933730|gb|DV173563.1|DV173563
genomic: AACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttt ... caattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
EST: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCG CAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
genomic: GAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTGTCGgtatggcttt ... caattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAA
tacgtcttccatttccttgtttttgaaactaaatttccatggatgcaattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAATTGTTAACAATCTAATGAAAGCTCCAGAGTTGGCTACCACGATGCAAGA
aactaaa putative branch site (score: 2)
ttttc putative PPT
tttttgaaactaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatttaattattttctttgggctagggagtggtgctctcactttacgtcttccatttccttgtttttgaaactaaatttccatggatgcaattttcagCAACTGCAAGAACAGTGGGTCATCTGTCCAAAAGCACTGAAGTGATGAAAATTGTTAACAATCTAATGAAAGCTCCAGAGTTGGCTACCACGATGCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA