Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgaccggaccaatgtttctatgatactgtctgtgattccttctcaaaatttgtggatgatagtatctttgcttgtgtgtgcagGTTGCAAGCTGGGGTGCTTATCTTATGAATAGGAACATCATCACCATGTCTTTTGCGCCAAGGGATTCACATGAGGCACAGGTACAGTTTGCATTAGAGC

Basic information

species Zea mays
transcript GRMZM2G164916_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164916_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g01450.1 (Oryza sativa), 3'ss of exon 2
gtgagtgaccggaccaatgtttctatgatactgtctgtgattcc----ttctcaaaatttgtggatgatagtatctttgcttgtgtgtgcagGTTGCAAGCTGGGGTGCTTATCTTATGAATAGGAACATCATCACCATGTCTTTTGCGCCAAGGGATTCACATGAGGCACAGGTACAGTTTGCATTAGAGC
||||||||     | |   |||| | |||| | | |||   | |    || | |  |||| || |||    |||||| | | || ||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| ||||| ||||| || || ||||||||||||||||| || ||||||||||| ||||
gtgagtgatttagcaa---tttccaagatattatgtgtttctgcaaattttttaggatttatgaatg----tatcttggat-gt-tgttcagGTGGCAAGTTGGGGCGCTTATCTTATTAAGAGGAACATCATCACTATGTCATTTGCACCTAGAGATTCACATGAGGCACAAGTGCAGTTTGCATTGGAGC

upper sequence: GRMZM2G164916_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA05G36550.1 (Glycine max), 3'ss of exon 1
--gtgagtgaccgga---ccaatgtttctatgatactgtctgtgattccttctc----aaaatttgtggatgatagt--atctttgcttgtg-tgtgcagGTTGCAAGCTGGGGTGCTTATCTTATGAATAGGAACATCATCACCATGTCTTTTGCGCCAAGGGATTCACATGAGGCACAGGTACAGTTTGCATTAGAGC
  |||| ||| || |   | |||    |  |   |||   | || ||  ||       |   | ||| | | ||| |  ||   | ||||   |||  |||||||||| ||||||||||| ||| |||| ||  |||||||  | ||||| ||||| ||||| ||| ||||||| |||||||| ||||||||||| ||  
tcgtgattgatcgaaaatcaaatcaaacgttaggactacatatgctttttttgtgtgtagggtgtgttgcttatacttaattccttcttgcactgtaaagGTTGCAAGTTGGGGTGCTTACCTTTTGAAAAGAGACATCATAGCTATGTCCTTTGCACCAAGAGATACACATGAAGCACAGGTCCAGTTTGCATTGGAAA

upper sequence: GRMZM2G164916_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA08G03000.1 (Glycine max), 3'ss of exon 1
---gtgagtgaccgga--ccaatgtttctatgatactgtctgtgattccttctc----aaaatttgtggatgatagt--atctttgcttgtg-tgtgcagGTTGCAAGCTGGGGTGCTTATCTTATGAATAGGAACATCATCACCATGTCTTTTGCGCCAAGGGATTCACATGAGGCACAGGTACAGTTTGCATTAGAGC
   |||| | | |  |  | |||    |  |   ||| | | || ||  ||       |  || ||| | | ||| |  ||   | ||||   |||  ||||||| || ||||||||||| ||| |||  ||  ||||| |  | ||||||||||| ||||| ||| ||||||| |||||||| |||||||| || ||  
taggtgatttatcataatcaaatcaaacgttaggactatatatgcttttttggtgggaaggatgtgttgcttatacttaattccttcttgcactgtaaagGTTGCGAGTTGGGGTGCTTACCTTTTGAGAAGAGACATCCTAGCTATGTCTTTTGCACCAAGAGATACACATGAAGCACAGGTCCAGTTTGCGTTGGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101384407|gb|EB814248.1|EB814248
EST:     TACCATTAAATGAAGGCAACATCCGAACTGCGCTTGATACTGGATGTGGA                         GTTGCAAGCTGGGGTGCTTATCTTATGAATAGGAACATCATCACCATGTCT
genomic: TACCATTAAATGAAGGCAACATCCGAACTGCGCTTGATACTGGATGTGGAgtgagtgacc ... gtgtgtgcagGTTGCAAGCTGGGGTGCTTATCTTATGAATAGGAACATCATCACCATGTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtgattccttctcaaaatttgtggatgatagtatctttgcttgtgtgtgcagGTTGCAAGCTGGGGTGCTTATCTTATGAATAGGAACATCATCACCATGTCTTTTGCGCCAAGGGATTCACATGAGGCACAGGTACAGTTTGCATTAGAGC
              tcaaaattt  TA-rich tract