1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agatgatgaccatttcatagttaaatgtttaaattcagaaacacatgaattttacaagtgttctgagttgcatgtggcccttttcctaagctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG
species | Zea mays |
transcript | GRMZM2G163912_T03 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|31350916|gb|CD435273.1|CD435273
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|148969207|gb|EE019955.2|EE019955
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|211431802|gb|FL298783.1|FL298783
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTNACMCTCTGGAAGA-GACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|149026634|gb|EE046054.2|EE046054
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|32833725|gb|CD973403.1|CD973403
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|211431805|gb|FL298786.1|FL298786
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGA-GACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|89757168|gb|DY686883.1|DY686883
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|211431800|gb|FL298781.1|FL298781
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|211431801|gb|FL298782.1|FL298782
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|148940178|gb|EC884940.2|EC884940
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|211431803|gb|FL298784.1|FL298784
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|32910548|gb|CF015360.1|CF015360
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|87156202|gb|DY400991.1|DY400991
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC AACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|148993804|gb|EE033889.2|EE033889
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|22521109|gb|BU079920.1|BU079920
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC AACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|149001239|gb|EE038515.2|EE038515
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|26558978|gb|CA831213.1|CA831213
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATCTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC AACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|148944987|gb|EC890160.2|EC890160
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|149099628|gb|EE185673.2|EE185673
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|87156913|gb|DY401702.1|DY401702
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC AACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|32867073|gb|CF006755.1|CF006755
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|22473217|gb|BU037697.1|BU037697
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC AACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCEST: gi|50333496|gb|CO528622.1|CO528622
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC GACTACAACATCATCAAGAGEST: gi|22520704|gb|BU079515.1|BU079515
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAG
EST: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTC AACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
genomic: GAGCAAGCATTTCACCCTCTGGAAGAGGACTCTTGTTCTGTGACTTCCTCgtatcctttt ... ctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGC
tgaattttacaagtgttctgagttgcatgtggcccttttcctaagctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG
ttcctaagc putative branch site
tttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgatgaccatttcatagttaaatgtttaaattcagaaacacatgaattttacaagtgttctgagttgcatgtggcccttttcctaagctgtgtaaagGACTACAACATCATCAAGAGCTGGCAGAACTAAGACAACTGTTCCTGTTGCCCCATCATTTGTGTGTGCTAACCGTGCTGACAAGAGGAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG