Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcactgacctgtttactaaaattttagactgtagctcagataaggctttgagcattcctcagtagtaatatatttcgtttgtcgccacacaactataagcaaaccgtattaaaagaacatttctgaatgtttacatttcattgtcctgttttttttttacgtacacagCTACAATGCTTCTGAGAGAAGGGAAAGCAGCAAAGGGGGAAAGGAGACGAACAGAAGGGCATCGGTGCCCTCTCACACACCGGCCAAGTCTGCATCCACA

Basic information

species Zea mays
transcript GRMZM2G163409_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163409_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g35580.1 (Oryza sativa), 3'ss of exon 3
gtaatcactgacctgtttactaaaattttagactgtagctcagataaggctt-tgagcattcctcagtagtaatatatttcgtttgtcgccacacaactataagcaaaccgtattaaaagaacatttctgaatgtttacatttcattgtcctgttttttttttacgtacacagCTACAATGCTTCTGAGAGAAGGGAAAGCAGCAAAGGGGGAAAGGAGACGAACAGAAGGGCATCGGTGCCCTCTCACACACCGGCCAAGTCTGCATCCACA
        | | |||||   ||  ||| |  |   |  |  |  |  |  || ||||  ||  ||||  ||   | |||  ||||||      |||| |  |   ||               |   ||| ||   |||  | |   ||| || | |   ||     | ||||| |||||||||||||| |||||||| |||||||| || || || ||||| ||||||||| |||| ||||| |||||  | |||||||| ||  ||||| | 
-------gtaatctgttacatactattctctaacctgtccaatttttgatttgtgagattttgtcag--gttcaaaattctgtttgtg-----acaatttcatttaatt------------gctcgtctaaaaccttatgtattgctgttctttgtgaattg---attcacagTTACAATGCTTCTGAAAGAAGGGAGAGCAGCAAGGGCGGCAAAGAGACCAACAGAAGGACATCAGTGCCTTCTCAGGCGCCGGCCAAATCCTCATCCGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26558995|gb|CA831230.1|CA831230
EST:     CAGTGGATGAAACGATATTGTGATTCTGTCAATGGTGGCTTCATGAGCAG                         CTACAATGCTTCTGAGAGAAGGGAAAGCAGCAAAGGGGGAAAGGAGACGAA
genomic: CAGTGGATGAAACGATATTGTGATTCTGTCAATGGTGGCTTCATGAGCAGgtaatcactg ... acgtacacagCTACAATGCTTCTGAGAGAAGGGAAAGCAGCAAAGGGGGAAAGGAGACGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaacatttctgaatgtttacatttcattgtcctgttttttttttacgtacacagCTACAATGCTTCTGAGAGAAGGGAAAGCAGCAAAGGGGGAAAGGAGACGAACAGAAGGGCATCGGTGCCCTCTCACACACCGGCCAAGTCTGCATCCACA
                              tcctgtttttttttta  CT-rich tract
                                   ttttttttttacgta  TA-rich tract