Sequence
atgc intronic sequence ATGC exonic sequencegtatggatcctacaatttgacagtaatacttgcagcaaccaaataagggaaataagctggtccatatatttttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATGTTCGTCTTGGTGCTCGCCCTCCTCGTGGTGTCTTATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G163193_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g43350.1 (Oryza sativa), 3'ss of exon 3
---------------------gta-tggatcctacaatttgacagtaatact-tgcagcaacc----aaataagggaaataagctggtc-catat-atttttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATGTTCGTCTTGGTGCTCGCCCTCCTCGTGGTGTCTTATTG
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gtatgtgttttatgctcaatgttactggtatatgcagttatccactgatattatgccttatctgttgactcgaggggaataagctagttatatcttaatcttatgttcagGAGTTCCTAAGGAACCCAGAAAGATATATTCGTCTTGGTGCGCGACCTCCACGAGGTGTCTTGTTG
upper sequence: GRMZM2G163193_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT5G58870.1 (Arabidopsis thaliana), 3'ss of exon 3
---------------------------------------gtatggatcctacaatttgacagtaat-acttgcagcaaccaaataagggaaataagctggtccatatatttttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATGTTCGTCTTGGTGCTCGCCCTCCTCGTGGTGTCTTATTG
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gtaggttcatttatccttatatatgctctgcactttgctgaaatgattgtcaaatgtttctgtaattgctttgtgttcatgctcttgttaatttctcttacacttggtttaactgttgcagGAATTTCTCAAGAATCCTGATAGGTATGTTCGTCTAGGTGCTCGTCCTCCTCGTGGTGTCCTACTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacttgcagcaaccaaataagggaaataagctggtccatatatttttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATGTTCGTCTTGGTGCTCGCCCTCCTCGTGGTGTCTTATTG
tttttttgttc CT-rich tract
atatatttttttgttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatggatcctacaatttgacagtaatacttgcagcaaccaaataagggaaataagctggtccatatatttttttgttcagGAGTTCTTAAGGAACCCAGAAAGATATGTTCGTCTTGGTGCTCGCCCTCCTCGTGGTGTCTTATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC