1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagacattttcaaatttatttgatggacctccacctctgtcctgtgaactgacgcttgctcattgtcagATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTACAAACG
species | Zea mays |
transcript | GRMZM2G163159_T05 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGG-GGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAAT ATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTAEST: gi|71760032|gb|DR957969.1|DR957969
genomic: GAGGCGGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAATgtgagacatt ... tcattgtcagATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTA
EST: GAGGCGGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAAT ATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTAEST: gi|78093036|gb|DV521410.1|DV521410
genomic: GAGGCGGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAATgtgagacatt ... tcattgtcagATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTA
EST: GAGGCGGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAAT ATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTAEST: gi|78108412|gb|DV526830.1|DV526830
genomic: GAGGCGGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAATgtgagacatt ... tcattgtcagATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTA
EST: GAGGCGGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAAT ATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTAEST: gi|110214716|gb|EC896613.1|EC896613
genomic: GAGGCGGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAATgtgagacatt ... tcattgtcagATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTA
EST: GAGGCGGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAAT ATGCTTATCTTTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTA
genomic: GAGGCGGCTTGCAAAGAAACTCCAACTGCCCTCAAGCGGAGCAACGCAATgtgagacatt ... tcattgtcagATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTA
tttatttgatggacctccacctctgtcctgtgaactgacgcttgctcattgtcagATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTACAAACG
aactgac putative branch site (score: 2)
cttgctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagacattttcaaatttatttgatggacctccacctctgtcctgtgaactgacgcttgctcattgtcagATGCTTATCTCTCAGTTAACCAGAGGATGCTTCAGAGAAGACATGGATCTACAAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA