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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgctggcggttccagttccagtcgaggagtcaatcacagattctgctggagactgcactgcagtgctaacttccctgccttgctgcattgttttactcagGTGAGCCCTGAGCTGTATGGCGACAGCAGCCCGAGGTTCTTCACGTATTGGACG

Basic information

species Zea mays
transcript GRMZM2G162928_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162928_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g07570.1 (Oryza sativa), 3'ss of exon 4
tgctggcggttccagttccagtcgaggagtcaatcacagattctgctggagactgcactgcagtgcta--acttccctgccttgctgcattgt--tttactcagGTGAGCCCTGAGCTGTATGGCGACAGCAGCCCGAGGTTCTTCACGTATTGGACG
  ||     |   | |    || ||| ||||||   | |||    |||  | ||| | || || |  |   |||  ||  ||     | ||||  |||| ||||||||||||||| |||||||| || | || ||| ||||||||||| || ||||| 
-act--taataaaaatggtggttgagcagtcaaa-gctgatcgatctgctggctggagtggagagacactgcttaactttctgaactctttgttctttattcagGTGAGCCCTGAACTGTATGGAGATAACAACCCAAGGTTCTTCACATACTGGACA

upper sequence: GRMZM2G162928_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ35641 (Selaginella moellendorffii), 3'ss of exon 4
tgctggcggttccagttccagtcgaggagtcaatcacagattctgctggagactgcactgcagtgctaacttccctgccttgctgcattgttttact--cagGTGAGCCCTGAGCTGTATGGCGACAGCAGCCCGAGGTTCTTCACGTATTGGACG
                                               | |  |||   |  ||  | || |||||||   |   | ||  | |   |  ||||||||||| ||||| || ||||||||||  || ||||| |||||||| ||||||
-----------------------------------------------gtaatctg---tctaggtcgaatttccctgtgatcgcggatgatctgtttgacagGTGAGCCCGGAGCTCTACGGCGACAGCAATCCCAGGTTGTTCACGTACTGGACG

upper sequence: GRMZM2G162928_T03 (Zea mays), 3'ss of exon 3
lower sequence: EFJ24376 (Selaginella moellendorffii), 3'ss of exon 4
tgctggcggttccagttccagtcgaggagtcaatcacagattctgctggagactgcactgcagtgctaacttccctgccttgctgcattgttttact--cagGTGAGCCCTGAGCTGTATGGCGACAGCAGCCCGAGGTTCTTCACGTATTGGACG
                                               | |  |||  ||  ||  | || |||| ||   |   | ||  | |   |  ||||||||||| ||||| || ||||||||||  || ||||| |||||||| ||||||
-----------------------------------------------gtaatctg-gct--aggtcgaatttccttgtgatcgcggatgatctgtttgacagGTGAGCCCGGAGCTCTACGGCGACAGCAATCCCAGGTTGTTCACGTACTGGACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggagactgcactgcagtgctaacttccctgccttgctgcattgttttactcagGTGAGCCCTGAGCTGTATGGCGACAGCAGCCCGAGGTTCTTCACGTATTGGACG
                  tgctaac  putative branch site (score: 1)
                                             ttttactc  putative PPT
                                         attgtttta  TA-rich tract