Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatatatatacacctcgatctatcgatcggctctgaaactctgatggcttgcatttgcatggtgggcgcggcataacggcggcggcggcggcgcttgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCCTGAACGTGTGGCCGGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTGT

Basic information

species Zea mays
transcript GRMZM2G162928_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162928_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g07570.1 (Oryza sativa), 3'ss of exon 3
tatatatatacacctcgatctatcgatcggctctgaaactctgat--ggcttgcatttgcatgg-tgggcgcggcataacggcggcggcggcggcgcttgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCCTGAACGTGTGGCCGGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTGT
   ||    |||              | |||   ||| || | ||   |  || | ||   | | || |   |       |  |  |     |  | | |||||| ||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||| |||| | ||||||| ||||||||||||||||||| |
-caatggcgacaatggcgatggcgagttggcaacgaa-ctttaattaagagtgtaattaattagctgagattgttgatgagctgatgaaaatgatgat-gcagCATGCGGTGGGGTACGTGACGGGGGATCAGTTCTACGGGGCGAAGGCGAGCCTGAACGTGTGGTCGGCGAGGGTGGCGACGGCGGCGGAGTTCAGCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149100217|gb|EE186279.2|EE186279
EST:     GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAG                         CACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACTGCGCCTAGGCCAGC
genomic: GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAGgtcagtgagt ... gcgcttgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGC
EST: gi|149009618|gb|EE041571.2|EE041571
EST:     GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAG                         CACGCGGTGGGGTACGTGACGGGGGGACCAGTTCTACGGCGCCAAGGCCAG
genomic: GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAGgtcagtgagt ... gcgcttgcagCACGCGGTGGGGTACGTGACGGGGG-ACCAGTTCTACGGCGCCAAGGCCAG
EST: gi|148965587|gb|EE016422.2|EE016422
EST:     GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAG                         CACGCGGTGGGGTACGTGACGGGG
genomic: GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAGgtcagtgagt ... gcgcttgcagCACGCGGTGGGGTACGTGACGGGG
EST: gi|89761374|gb|DY689412.1|DY689412
EST:     GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAG                         CACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGC
genomic: GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAGgtcagtgagt ... gcgcttgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGC
EST: gi|78075240|gb|DV503674.1|DV503674
EST:     GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAG                         CACGCGGTGGGGGACGTGACGGGGGACCAGTTCTACGGCGCCCAGGCCAGC
genomic: GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAGgtcagtgagt ... gcgcttgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGC
EST: gi|148954070|gb|EC899469.2|EC899469
EST:     GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAG                         CACGCGGTGGGGAACGTGACGGG
genomic: GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAGgtcagtgagt ... gcgcttgcagCACGCGGTGGGGTACGTGACGGG
EST: gi|149070038|gb|EE158438.2|EE158438
EST:     GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAG                         CACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAG
genomic: GCAGCAGCAGCAGCAACGCCCGCCGCGACTCCACCAGCAGCGGCCATGAGgtcagtgagt ... gcgcttgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcttgcatttgcatggtgggcgcggcataacggcggcggcggcggcgcttgcagCACGCGGTGGGGTACGTGACGGGGGACCAGTTCTACGGCGCCAAGGCCAGCCTGAACGTGTGGCCGGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTGT
                         gcataac  putative branch site (score: 3)